X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1t3qD_.53.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1t3qD_.53.alig.html;h=24d2ba2b57cb899c35a0ae99a407c22ee528e83b;hp=0000000000000000000000000000000000000000;hb=207b06de28859536277608ad94897eaa526b1279;hpb=8537d486848be3e97578248dae6bede12e343fe1 diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1t3qD_.53.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1t3qD_.53.alig.html new file mode 100644 index 0000000..24d2ba2 --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1t3qD_.53.alig.html @@ -0,0 +1,203 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with c1t3qD_ + + + + + + + + + + +
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Return to main resultsRetrieve Phyre Job Id +
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Job DescriptionFER_CAPAN_1-144
Confidence98.01%DateWed Jan 4 12:02:18 GMT 2017
Rank53Aligned Residues48
% Identity23%Templatec1t3qD_
PDB infoPDB header:oxidoreductaseChain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; +PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 +
Resolution1.80 Å
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  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment
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  51........60.........70.........80.........90........
Predicted Secondary structure 
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Query SS confidence 
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Query Sequence KVKLITPDGPIEFDCPDNVYILDQAEE.AGHD.LPYSCRAGSCSSCAGKI
Query Conservation  
      
          
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Alig confidence 
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Template Conservation  
   
    
 
 
   
 
   
 
 
  
 
Template Sequence RISATINGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI
Template Known Secondary structure TT
TTSBTT
TTS
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SSSSS
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Template Predicted Secondary structure 
Template SS confidence 
  11........20.........30.........40.........50.........60
 
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Download:Text versionFASTA version

No model constructed - rank, confidence too low

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Phyre is for non-commercial use only

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Commercial users please contact Michael Sternberg

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols +10, 845-858 (2015) + [paper] + [Citation + link]
 
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© Structural Bioinformatics Group, Imperial College, London
Lawrence +Kelley, Michael Sternberg 
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Phyre2 is part of Genome3D
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