X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Ffeatures%2Funiprotsequencefetcher.html;fp=help%2Fhelp%2Fhtml%2Ffeatures%2Funiprotsequencefetcher.html;h=1d368ef8ef0c3699ebd59e4c68edcb131a79fbc3;hp=25d1a1734f53609ec91a0b66178e491a04bfa70c;hb=dd2bb0b112c9628cc58c6a43c52602d03ee82346;hpb=76bc0f9104ff45cc30648e9ad883f1393a7c7b6d
diff --git a/help/help/html/features/uniprotsequencefetcher.html b/help/help/html/features/uniprotsequencefetcher.html
index 25d1a17..1d368ef 100644
--- a/help/help/html/features/uniprotsequencefetcher.html
+++ b/help/help/html/features/uniprotsequencefetcher.html
@@ -32,14 +32,11 @@
allows sequences to be located via gene name, keywords, or even
via manual cross-referencing from UniProt or other
bioinformatics websites.
-
- Please Note:Versions of Jalview older than 2.11.2.3 may need a configuration change
- in order to access freetext search. Please see this post:
- https://discourse.jalview.org/t/uniprot-free-text-search-not-working-in-jalview-2-11-2-2-and-earlier/1825
- in Jalview's discussion forum for a workaround.
+ Please Note:UniProt updated their API in July 2022. Versions of Jalview older than 2.11.2.4 will not work with the July 2022 UniProt free text search.
+
+ The new UniProt API has a different search syntax for ranges of dates and numbers, and different query fields for advanced searches. The general syntax of combining queries remains the same. Because of these differences, your previously saved searches will not appear in the dropdown list next to the search box. If you need to access these old searches they can be found in your ~/.jalview_properties
file with the label CACHE.UNIPROT_FTS
. If you want to transfer them to the new API search then copy the values to the CACHE.UNIPROT_2022_FTS
label (or rename the existing label if the new one does not exist) (see the UniProtKB query fields page).
To open the UniProt Sequence Fetcher, select UniProt as the database from any Sequence Fetcher dialog (opened @@ -78,8 +75,7 @@
human antigen |
@@ -144,7 +140,7 @@
acids.
||
citation:(author:Arai author:Chung) |
+ (lit_author:Arai) AND (lit_author:Chung) |
All entries with a publication that was coauthored by two specific authors. |