- Welcome to Jalview Version $$Version-Rel$$ !!
-
19 April 2022
-Jalview 2.11.2.2 is the second patch release in the 2.11.2 series.
- -- This release series provides support for two popular 3D - structure visualisation tools, new features for discovery of 3D - structures, improved platform integration and a new command line - tool allowing Jalview to be more easily called from scripts.
- -
- View predicted protein structures via 3D-Beacons
- Jalview 2.11.2's Structure
- Chooser includes a client for the 3D-Beacons Network. Launched in
- 2021, the 3D-Beacons network (www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/)
- provides a central point for the retrieval of predicted and observed
- 3D structures for sequences in Uniprot, including homology models
- from Swiss-model and deep learning based predictions from the EBI's
- Alphafold database (Orengo et al. 2020, doi:10.12688/f1000research.20559.1).
-
- Support for viewing structures with ChimeraX and
- Pymol
Jalview's 3D structure viewer system has been
- re-architected to allow easier integration of external structure
- viewers, and takes advantage of the strucViz2 Chimera communications
- library developed by Scooter Morris (doi:10.1093/bioinformatics/btm329).
- The Structures
- Preferences tab provides new options allowing ChimeraX and
- Pymol to be used for visualising external 3D structures. Views
- from all structure viewers are saved in Jalview Projects, allowing
- them to be shared with others using Jalview 2.11.2 or later,
- providing they have the same viewer installed and configured to be
- used with Jalview.
Jalview
- 2.11.2 has been tested with Pymol 2.5.0 (community) and 2.5.2
- (incentive). For ChimeraX, we recommend using v1.3 or later.
-
Other highlights include:
-- For the full details, see the Jalview 2.11.2.1 - release notes. -
-
- Known Issues
The following known issues will
- be addressed in a minor patch release.
-
-