X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fclustal.html;fp=help%2Fhtml%2FcolourSchemes%2Fclustal.html;h=b3d44dbf1c49e3c5623d1b4b5fc0f309ed568396;hp=7b68c8434651e3134e4b84c179ca6985aa9752cd;hb=17cdbbba31b43aa92793c30629e586ef0012af72;hpb=bf64f4d798bf695600cc16cb7e421c77ac8b1da3 diff --git a/help/html/colourSchemes/clustal.html b/help/html/colourSchemes/clustal.html index 7b68c84..b3d44db 100755 --- a/help/html/colourSchemes/clustal.html +++ b/help/html/colourSchemes/clustal.html @@ -40,9 +40,10 @@ td { is assigned a colour if the amino acid profile of the alignment at that position meets some minimum criteria specific for the residue type.
-The table below gives these criteria as clauses: {+X%,xx,y}, - where X is the minimum percentage presence for any of the xx (or y) - residue types.
+The table below gives these criteria as clauses: {>X%,xx,y},
+ where X is the threshold percentage presence for any of the xx (or y)
+ residue types.
+
For example, K or R is coloured red if the column includes more than 60% K or R (combined), or more than 80% of either K or R or Q (individually).
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