X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fcontroller%2FAlignViewController.java;h=1fc194651420304580924613f7fd21dc3386c389;hp=0bb2d038a817aa1c300c5669372300130ac5cc93;hb=038cb9c86641c3de91d8f330c5e3267507c46643;hpb=08f7a2be3977da8704dd4751de7245bcc6fc41c3

diff --git a/src/jalview/controller/AlignViewController.java b/src/jalview/controller/AlignViewController.java
index 0bb2d03..1fc1946 100644
--- a/src/jalview/controller/AlignViewController.java
+++ b/src/jalview/controller/AlignViewController.java
@@ -90,7 +90,8 @@ public class AlignViewController implements AlignViewControllerI
         gps = jalview.analysis.Grouping.makeGroupsFromCols(
                 (sg == null) ? viewport.getAlignment().getSequencesArray()
                         : sg.getSequences().toArray(new SequenceI[0]),
-                cs, viewport.getAlignment().getGroups());
+                cs, viewport.getAlignment().getGroups(),
+                viewport.getAlignment().getHiddenColumns());
       }
     }
     if (gps != null)