X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblProtein.java;h=0280f1613a16c6f17ed32b44ac345364ebd56685;hp=99006aa0f8e586d7160c289d4d6bfe79ce847508;hb=a4f2a7f356b8edab17a9a5bb6f2e71a1419792a9;hpb=f59dd9efbb3dfc313ab0b0507832e21cd0076fe1 diff --git a/src/jalview/ext/ensembl/EnsemblProtein.java b/src/jalview/ext/ensembl/EnsemblProtein.java index 99006aa..0280f16 100644 --- a/src/jalview/ext/ensembl/EnsemblProtein.java +++ b/src/jalview/ext/ensembl/EnsemblProtein.java @@ -22,6 +22,10 @@ package jalview.ext.ensembl; import jalview.datamodel.AlignmentI; import jalview.datamodel.SequenceFeature; +import jalview.datamodel.SequenceI; + +import java.util.ArrayList; +import java.util.List; import com.stevesoft.pat.Regex; @@ -106,10 +110,10 @@ public class EnsemblProtein extends EnsemblSeqProxy } @Override - protected boolean identifiesSequence(SequenceFeature sf, String accId) + protected List getIdentifyingFeatures(SequenceI seq, + String accId) { - // not applicable - protein sequence is not a 'subset' of genomic sequence - return false; + return new ArrayList<>(); } @Override