X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;fp=src%2Fjalview%2Fgui%2FAlignFrame.java;h=db6870e984a4435d693174c4cf7a980077a5d3aa;hp=9d8407adb76192066e9aba771c30b14626375f5f;hb=433801a3edef339c0d679eb87e07498ab1325457;hpb=e23c809d6cd203187c5f65efd03741ec4cb637be

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 9d8407a..db6870e 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1141,16 +1141,18 @@ public class AlignFrame extends GAlignFrame
     {
       WsParamSetI set = new HMMERPreset();
       WsJobParameters params = new WsJobParameters(store, set, args);
-      if (params.showRunDialog())
-      {
-        args = params.getJobParams();
-      }
-      else
-      {
-        return; // user cancelled
-      }
+      params.showRunDialog().thenAccept((startJob) -> {
+        if (startJob)
+        {
+          var args2 = params.getJobParams();
+          new Thread(new HMMBuild(this, args2)).start();
+        }
+      });
+    }
+    else
+    {
+      new Thread(new HMMBuild(this, args)).start();
     }
-    new Thread(new HMMBuild(this, args)).start();
   }
 
   @Override
@@ -1172,16 +1174,18 @@ public class AlignFrame extends GAlignFrame
     {
       WsParamSetI set = new HMMERPreset();
       WsJobParameters params = new WsJobParameters(store, set, args);
-      if (params.showRunDialog())
-      {
-        args = params.getJobParams();
-      }
-      else
-      {
-        return; // user cancelled
-      }
+      params.showRunDialog().thenAccept((startJob) -> {
+        if (startJob)
+        {
+          var args2 = params.getJobParams();
+          new Thread(new HMMAlign(this, args2)).start();
+        }
+      });
+    }
+    else
+    {
+      new Thread(new HMMAlign(this, args)).start();
     }
-    new Thread(new HMMAlign(this, args)).start();
   }
 
   @Override
@@ -1203,17 +1207,20 @@ public class AlignFrame extends GAlignFrame
     {
       WsParamSetI set = new HMMERPreset();
       WsJobParameters params = new WsJobParameters(store, set, args);
-      if (params.showRunDialog())
-      {
-        args = params.getJobParams();
-      }
-      else
-      {
-        return; // user cancelled
-      }
+      params.showRunDialog().thenAccept((startJob) -> {
+        if (startJob)
+        {
+          var args2 = params.getJobParams();
+          new Thread(new HMMSearch(this, args2)).start();
+          alignPanel.repaint();
+        }
+      });
+    }
+    else
+    {
+      new Thread(new HMMSearch(this, args)).start();
+      alignPanel.repaint();
     }
-    new Thread(new HMMSearch(this, args)).start();
-    alignPanel.repaint();
   }
 
   @Override
@@ -1232,18 +1239,20 @@ public class AlignFrame extends GAlignFrame
     {
       WsParamSetI set = new HMMERPreset();
       WsJobParameters params = new WsJobParameters(store, set, args);
-      if (params.showRunDialog())
-      {
-        args = params.getJobParams();
-      }
-      else
-      {
-        return; // user cancelled
-      }
+      params.showRunDialog().thenAccept((startJob) -> {
+        if (startJob)
+        {
+          var args2 = params.getJobParams();
+          new Thread(new JackHMMER(this, args2)).start();
+          alignPanel.repaint();
+        }
+      });
+    }
+    else
+    {
+      new Thread(new JackHMMER(this, args)).start();
+      alignPanel.repaint();
     }
-    new Thread(new JackHMMER(this, args)).start();
-    alignPanel.repaint();
-
   }
 
   /**