X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSeqPanel.java;fp=src%2Fjalview%2Fgui%2FSeqPanel.java;h=ef9d8b3bfe6bd2f669d14222827b30b9f4843ae8;hp=6773611acfc4974f9fbecfe77bdd2c18b87b1d8b;hb=dec3f30e62e66366d1f697157201c95b50a5e395;hpb=fe654aee9b43fb9c9307830c277f1e63576826ae

diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 6773611..ef9d8b3 100644
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -804,7 +804,9 @@ public class SeqPanel extends JPanel implements MouseListener,
   /**
    * Removes from the list of features any that start after, or end before, the
    * given column position. This allows us to retain only those features
-   * adjacent to a gapped position that straddle the position.
+   * adjacent to a gapped position that straddle the position. Contact features
+   * that 'straddle' the position are also removed, since they are not 'at' the
+   * position.
    * 
    * @param features
    * @param column
@@ -819,7 +821,8 @@ public class SeqPanel extends JPanel implements MouseListener,
     while (it.hasNext())
     {
       SequenceFeature sf = it.next();
-      if (sequence.findIndex(sf.getBegin()) > column
+      if (sf.isContactFeature()
+              || sequence.findIndex(sf.getBegin()) > column
               || sequence.findIndex(sf.getEnd()) < column)
       {
         it.remove();