X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fio%2FIdentifyFile.java;fp=src%2Fjalview%2Fio%2FIdentifyFile.java;h=cab3e60c2163931c436bf55b39091788e3bb6da7;hp=d2c586a2fac2b401f057a630d2fafb6a9ea4dd6a;hb=3c7d4cf5ef1331e2fad9c617c228486badf6f6a0;hpb=556647d95b0a68273fce9ade5ff97f1de9292b2c

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index d2c586a..cab3e60 100755
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -394,10 +394,8 @@ public class IdentifyFile
         }
         else // phylogenetic file
         {
-          String identifier = data.toLowerCase();
-          String secondLine = source.nextLine().toLowerCase();
-          if (identifier.startsWith("<phyloxml")
-                  || secondLine.startsWith("<phyloxml"))
+          // may also have a <xml header before hand, probably need to check it 
+          if (data.toLowerCase(Locale.ROOT).startsWith("<phyloxml"))
           {
             reply = FileFormat.PhyloXML;
             break;