X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FTree.java;fp=src%2Fjalview%2Fio%2Fvamsas%2FTree.java;h=00e4fbc97ce7334c5258f018a01e001af3a74103;hp=9c1f5ea1638d7819822b7f424d535964ae218561;hb=e95c5f895775891d55d9f23d5da64f8ce6bd07bb;hpb=74f21ca6ca8fa17d53708e457d191e15904f8310

diff --git a/src/jalview/io/vamsas/Tree.java b/src/jalview/io/vamsas/Tree.java
index 9c1f5ea..00e4fbc 100644
--- a/src/jalview/io/vamsas/Tree.java
+++ b/src/jalview/io/vamsas/Tree.java
@@ -271,14 +271,14 @@ public class Tree extends DatastoreItem
    * @return vector of alignment sequences in order of SeqCigar array (but
    *         missing unfound seqcigars)
    */
-  private Vector findAlignmentSequences(AlignmentI jal,
+  private Vector<SequenceI> findAlignmentSequences(AlignmentI jal,
           SeqCigar[] sequences)
   {
     SeqCigar[] tseqs = new SeqCigar[sequences.length];
     System.arraycopy(sequences, 0, tseqs, 0, sequences.length);
-    Vector alsq = new Vector();
-    List<SequenceI> jalsqs;
-    synchronized (jalsqs = jal.getSequences())
+    Vector<SequenceI> alsq = new Vector<>();
+    List<SequenceI> jalsqs = jal.getSequences();
+    synchronized (jalsqs)
     {
       for (SequenceI asq : jalsqs)
       {