X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FRfam.java;fp=src%2Fjalview%2Fws%2Fdbsources%2FRfam.java;h=34fe72f0d7bc1ecce1017689087405099c85cb8d;hp=62f2b28c05aedf0437c670839c341c6fb56aa88d;hb=8edebdd9789b2d93fb8f9db24b8be2c1e6317690;hpb=eee8dfa05eeea5b7cc295ba020647842502efe63 diff --git a/src/jalview/ws/dbsources/Rfam.java b/src/jalview/ws/dbsources/Rfam.java index 62f2b28..34fe72f 100644 --- a/src/jalview/ws/dbsources/Rfam.java +++ b/src/jalview/ws/dbsources/Rfam.java @@ -20,10 +20,11 @@ */ package jalview.ws.dbsources; -import com.stevesoft.pat.Regex; - +import jalview.datamodel.DBRefSource; import jalview.ws.seqfetcher.DbSourceProxy; +import com.stevesoft.pat.Regex; + /** * Contains methods for fetching sequences from Rfam database * @@ -36,8 +37,8 @@ abstract public class Rfam extends Xfam implements DbSourceProxy { super(); // all extensions of this RFAM source base class are DOMAINDB sources - addDbSourceProperty(jalview.datamodel.DBRefSource.DOMAINDB); - addDbSourceProperty(jalview.datamodel.DBRefSource.ALIGNMENTDB); + addDbSourceProperty(DBRefSource.DOMAINDB); + addDbSourceProperty(DBRefSource.ALIGNMENTDB); } /* @@ -72,7 +73,7 @@ abstract public class Rfam extends Xfam implements DbSourceProxy * this doesn't work - DbSource is key for the hash of DbSourceProxy instances * - 1:many mapping for DbSource to proxy will be lost. * suggest : RFAM is an * 'alignment' source - means proxy is higher level than a sequence source. - * return jalview.datamodel.DBRefSource.RFAM; } + * return DBRefSource.RFAM; } */ /* @@ -112,7 +113,7 @@ abstract public class Rfam extends Xfam implements DbSourceProxy */ public String getXfamSource() { - return jalview.datamodel.DBRefSource.RFAM; + return DBRefSource.RFAM; } }