X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws1%2FAnnotate3D.java;fp=src%2Fjalview%2Fws%2Fjws1%2FAnnotate3D.java;h=022ae6d6ff399be4ee3f8a1a6bb03ef27c3eea06;hp=bae03577e8aff3ebaaeb7390a6cb7a4c4c02dab8;hb=9e2b4ccd9c95ffa75130bf808b0037ea6a1054ca;hpb=4dd40d33a5becefd51c31a426f2501b21029f82c diff --git a/src/jalview/ws/jws1/Annotate3D.java b/src/jalview/ws/jws1/Annotate3D.java index bae0357..022ae6d 100644 --- a/src/jalview/ws/jws1/Annotate3D.java +++ b/src/jalview/ws/jws1/Annotate3D.java @@ -86,7 +86,8 @@ public class Annotate3D AlignmentI al = null; while (r.hasNext()) { - FileParse fp = new InputStreamParser(r.next(), source.getDataName()); + FileParse fp = new InputStreamParser(r.next(), + source.getDataName()); AlignmentI nal = new FormatAdapter().readFromFile(fp, FileFormat.Rnaml); if (al == null) @@ -107,9 +108,8 @@ public class Annotate3D } else { - throw new IOException( - MessageManager - .getString("exception.unexpected_handling_rnaml_translation_for_pdb"), + throw new IOException(MessageManager.getString( + "exception.unexpected_handling_rnaml_translation_for_pdb"), x); } } @@ -180,8 +180,8 @@ public class Annotate3D URL url = new URL( "http://paradise-ibmc.u-strasbg.fr/webservices/annotate3d?data=" + content); - BufferedReader is = new BufferedReader(new InputStreamReader( - url.openStream())); + BufferedReader is = new BufferedReader( + new InputStreamReader(url.openStream())); String str4; while ((str4 = is.readLine()) != null) {