X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=srcjar%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2Frna%2FModeleBackboneElement.java;fp=srcjar%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2Frna%2FModeleBackboneElement.java;h=6b16a05b3208262c3b62859f83b81ea67c60609a;hp=0000000000000000000000000000000000000000;hb=2d6292c0377bc6b773c6844a45d3f2c5fac352c7;hpb=954af328a2a6a0055572cd1a09ee035301222574

diff --git a/srcjar/fr/orsay/lri/varna/models/rna/ModeleBackboneElement.java b/srcjar/fr/orsay/lri/varna/models/rna/ModeleBackboneElement.java
new file mode 100644
index 0000000..6b16a05
--- /dev/null
+++ b/srcjar/fr/orsay/lri/varna/models/rna/ModeleBackboneElement.java
@@ -0,0 +1,106 @@
+package fr.orsay.lri.varna.models.rna;
+
+import java.awt.Color;
+import java.io.Serializable;
+
+import javax.xml.transform.sax.TransformerHandler;
+
+import org.xml.sax.SAXException;
+import org.xml.sax.helpers.AttributesImpl;
+
+import fr.orsay.lri.varna.utils.XMLUtils;
+
+public class ModeleBackboneElement implements Serializable{
+
+	/**
+	 * 
+	 */
+	private static final long serialVersionUID = -614968737102943216L;
+
+	public ModeleBackboneElement(int index, BackboneType t)
+	{
+		_index=index;
+		if (t==BackboneType.CUSTOM_COLOR)
+		{
+			throw new IllegalArgumentException("Error: Missing Color while constructing Backbone");
+		}
+		_type=t;
+	}
+	
+	public ModeleBackboneElement(int index, Color c)
+	{
+		_index=index;
+		_type=BackboneType.CUSTOM_COLOR;
+		_color = c;
+	}
+	
+	public enum BackboneType{
+		SOLID_TYPE ("solid"),
+		DISCONTINUOUS_TYPE ("discontinuous"),
+		MISSING_PART_TYPE ("missing"),
+		CUSTOM_COLOR ("custom");
+		
+		private String label;
+		
+		BackboneType(String s)
+		{
+			label = s;
+		}
+		
+		public String getLabel()
+		{
+			return label;
+		}
+		
+		
+		public static BackboneType getType(String lbl)
+		{
+			BackboneType[] vals = BackboneType.values();
+			for(int i=0;i<vals.length;i++)
+			{
+				if (vals[i].equals(lbl))
+					return vals[i];
+			}
+			return null;
+		}
+		
+	};
+	
+	private BackboneType _type;
+	private Color _color = null;
+	private int _index;
+
+	
+	public BackboneType getType()
+	{
+		return _type;
+	}
+	
+	public int getIndex()
+	{
+		return _index;
+	}
+	
+	public Color getColor()
+	{
+		return _color;
+	}
+	
+	public static String XML_ELEMENT_NAME = "BackboneElement";
+	public static String XML_VAR_INDEX_NAME = "index";
+	public static String XML_VAR_TYPE_NAME = "type";
+	public static String XML_VAR_COLOR_NAME = "color";	
+	
+	public void toXML(TransformerHandler hd) throws SAXException
+	{
+		AttributesImpl atts = new AttributesImpl();
+		atts.addAttribute("","",XML_VAR_INDEX_NAME,"CDATA",""+_index);
+		atts.addAttribute("","",XML_VAR_TYPE_NAME,"CDATA",""+_type.getLabel());
+		if(_type==BackboneType.CUSTOM_COLOR){
+			atts.addAttribute("","",XML_VAR_COLOR_NAME,"CDATA",""+XMLUtils.toHTMLNotation(_color));	
+		}
+		hd.startElement("","",XML_ELEMENT_NAME,atts);
+		hd.endElement("","",XML_ELEMENT_NAME);
+	}
+
+}