X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=test%2Fjalview%2Fbin%2FcommandsTest2.argfile1;fp=test%2Fjalview%2Fbin%2FcommandsTest2.argfile1;h=85eccd96799fd73dc03a717f9f28d04b72dbe0a0;hp=ea3a1beb58629e1831d753dd7aa8b05b0c7a00f4;hb=b122ba188c2ffcbb302809bafc02058e355643ee;hpb=e91b3bef83f320e13c59ad5d21d69f0abf3d7507

diff --git a/test/jalview/bin/commandsTest2.argfile1 b/test/jalview/bin/commandsTest2.argfile1
index ea3a1be..85eccd9 100644
--- a/test/jalview/bin/commandsTest2.argfile1
+++ b/test/jalview/bin/commandsTest2.argfile1
@@ -1,9 +1,8 @@
---substitutions
 --append=examples/test_fab41.result/sample.a2m
 --showannotations
 --showssannotations
 --colour=gecos-flower
---structure=[viewer=jmol,tempfac=plddt,paematrix={dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json]{dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
+--structure=[structureviewer=jmol,tempfac=plddt,paematrix={dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json]{dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
 --structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
 --structureviewer=jmol
 --paematrix={dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json
@@ -12,7 +11,7 @@
 --structureviewer=jmol
 --paematrix={dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json
 --tempfac=plddt
---structure=[viewer=none]{dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
+--structure=[structureviewer=none]{dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
 --paematrix={dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json
 --tempfac=plddt
 --structure={dirname}/test_fab41_unrelaxed_rank_5_model_1.pdb