X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=test%2Fjalview%2Fschemes%2FScoreMatrixPrinter.java;fp=test%2Fjalview%2Fschemes%2FScoreMatrixPrinter.java;h=0000000000000000000000000000000000000000;hp=80241fb75e5621d2b8a9b8ac313ed40bb655632d;hb=773ac00a0ac2eb882e993e567a650ee4d7df3dda;hpb=651ed4273f899e80f4931bed82714355e16fd837 diff --git a/test/jalview/schemes/ScoreMatrixPrinter.java b/test/jalview/schemes/ScoreMatrixPrinter.java deleted file mode 100644 index 80241fb..0000000 --- a/test/jalview/schemes/ScoreMatrixPrinter.java +++ /dev/null @@ -1,64 +0,0 @@ -/* - * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) - * Copyright (C) $$Year-Rel$$ The Jalview Authors - * - * This file is part of Jalview. - * - * Jalview is free software: you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 - * of the License, or (at your option) any later version. - * - * Jalview is distributed in the hope that it will be useful, but - * WITHOUT ANY WARRANTY; without even the implied warranty - * of MERCHANTABILITY or FITNESS FOR A PARTICULAR - * PURPOSE. See the GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with Jalview. If not, see . - * The Jalview Authors are detailed in the 'AUTHORS' file. - */ -package jalview.schemes; - -import jalview.api.analysis.ScoreModelI; -import jalview.gui.JvOptionPane; - -import java.util.Map; - -import org.testng.annotations.BeforeClass; - -public class ScoreMatrixPrinter -{ - - @BeforeClass(alwaysRun = true) - public void setUpJvOptionPane() - { - JvOptionPane.setInteractiveMode(false); - JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION); - } - - public void printAllMatrices() - { - for (Map.Entry sm : ResidueProperties.scoreMatrices - .entrySet()) - { - System.out.println("Matrix " + sm.getKey()); - System.out.println(sm.getValue().toString()); - } - } - - public void printHTMLMatrices() - { - for (Map.Entry _sm : ResidueProperties.scoreMatrices - .entrySet()) - { - if (_sm.getValue() instanceof ScoreMatrix) - { - ScoreMatrix sm = (ScoreMatrix) _sm.getValue(); - System.out.println("Matrix " + _sm.getKey()); - System.out.println(sm.outputMatrix(true)); - } - } - } - -}