X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=utils%2FHelpLinksChecker.java;h=dee5322a21eae3827ea448d34d11304615784da6;hp=3b641807c63a00a664fab861a11d28f6f74b142e;hb=1201d0ab19ce83a8dce3652ddd06a6098019be5b;hpb=f9b69c1c25c06daf58c16693fcf93b10922d8cdd

diff --git a/utils/HelpLinksChecker.java b/utils/HelpLinksChecker.java
index 3b64180..dee5322 100644
--- a/utils/HelpLinksChecker.java
+++ b/utils/HelpLinksChecker.java
@@ -282,10 +282,10 @@ public class HelpLinksChecker implements BufferedLineReader.LineCleaner
         else
         {
           internalHrefCount++;
-          String relFile = System.getProperty("os.name").indexOf("Win") > -1 ? href.replace('/', '\\') : href;
+          String relFile = System.getProperty("os.name").indexOf("Win") > -1 ? href.replace("/", File.separator) : href;
           File hrefFile = href.equals("") ? htmlFile : new File(htmlFolder,
                   href);
-          if (hrefFile != htmlFile && !fileExists(hrefFile, href))
+          if (hrefFile != htmlFile && !fileExists(hrefFile, relFile))
           {
             badLink = true;
             invalidInternalHrefCount++;