X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=utils%2Fjalviewjs%2Fclasslists%2Fjvexamplefile.txt;fp=utils%2Fjalviewjs%2Fclasslists%2Fjvexamplefile.txt;h=ae01fe13056b70013838c09c17f680bba6c80e93;hp=0000000000000000000000000000000000000000;hb=e95c5f895775891d55d9f23d5da64f8ce6bd07bb;hpb=74f21ca6ca8fa17d53708e457d191e15904f8310

diff --git a/utils/jalviewjs/classlists/jvexamplefile.txt b/utils/jalviewjs/classlists/jvexamplefile.txt
new file mode 100644
index 0000000..ae01fe1
--- /dev/null
+++ b/utils/jalviewjs/classlists/jvexamplefile.txt
@@ -0,0 +1,1183 @@
+
+com/stevesoft/pat/Any.js
+com/stevesoft/pat/Bracket.js
+com/stevesoft/pat/Branch.js
+com/stevesoft/pat/CaseMgr.js
+com/stevesoft/pat/DotMulti.js
+com/stevesoft/pat/End.js
+com/stevesoft/pat/FastBracket.js
+com/stevesoft/pat/FastChar.js
+com/stevesoft/pat/FastMulti.js
+com/stevesoft/pat/NUnicodeAlpha.js
+com/stevesoft/pat/NUnicodeCurrency.js
+com/stevesoft/pat/NUnicodeDigit.js
+com/stevesoft/pat/NUnicodeMath.js
+com/stevesoft/pat/NUnicodePunct.js
+com/stevesoft/pat/NUnicodeW.js
+com/stevesoft/pat/NUnicodeWhite.js
+com/stevesoft/pat/NoPattern.js
+com/stevesoft/pat/NullPattern.js
+com/stevesoft/pat/Or.js
+com/stevesoft/pat/OrMark.js
+com/stevesoft/pat/Pattern.js
+com/stevesoft/pat/PatternSub.js
+com/stevesoft/pat/Pthings.js
+com/stevesoft/pat/Range.js
+com/stevesoft/pat/RegHolder.js
+com/stevesoft/pat/RegOpt.js
+com/stevesoft/pat/RegRes.js
+com/stevesoft/pat/Regex.js
+com/stevesoft/pat/ReplaceRule.js
+com/stevesoft/pat/Replacer.js
+com/stevesoft/pat/Rthings.js
+com/stevesoft/pat/Skip.js
+com/stevesoft/pat/StrPos.js
+com/stevesoft/pat/StringLike.js
+com/stevesoft/pat/StringRule.js
+com/stevesoft/pat/SubMark.js
+com/stevesoft/pat/UniValidator.js
+com/stevesoft/pat/UnicodeAlpha.js
+com/stevesoft/pat/UnicodeCurrency.js
+com/stevesoft/pat/UnicodeDigit.js
+com/stevesoft/pat/UnicodeLower.js
+com/stevesoft/pat/UnicodeMath.js
+com/stevesoft/pat/UnicodePunct.js
+com/stevesoft/pat/UnicodeUpper.js
+com/stevesoft/pat/UnicodeW.js
+com/stevesoft/pat/UnicodeWhite.js
+com/stevesoft/pat/Validator.js
+com/stevesoft/pat/oneChar.js
+com/stevesoft/pat/parsePerl.js
+com/stevesoft/pat/patInf.js
+com/stevesoft/pat/patInt.js
+com/stevesoft/pat/wrap/StringWrap.js
+intervalstore/api/IntervalI.js
+intervalstore/api/IntervalStoreI.js
+intervalstore/impl/BinarySearcher.js
+intervalstore/impl/IntervalStore.js
+intervalstore/impl/NCList.js
+intervalstore/impl/NCNode.js
+jalview/analysis/AAFrequency.js
+jalview/analysis/AlignSeq.js
+jalview/analysis/AlignmentAnnotationUtils.js
+jalview/analysis/AlignmentUtils.js
+jalview/analysis/AnnotationSorter.js
+jalview/analysis/AverageDistanceTree.js
+jalview/analysis/Conservation.js
+jalview/analysis/CrossRef.js
+jalview/analysis/GeneticCodeI.js
+jalview/analysis/GeneticCodes.js
+jalview/analysis/Grouping.js
+jalview/analysis/NJTree.js
+jalview/analysis/SeqsetUtils.js
+jalview/analysis/SequenceIdMatcher.js
+jalview/analysis/TreeBuilder.js
+jalview/analysis/TreeModel.js
+jalview/analysis/scoremodels/DistanceScoreModel.js
+jalview/analysis/scoremodels/FeatureDistanceModel.js
+jalview/analysis/scoremodels/PIDModel.js
+jalview/analysis/scoremodels/ScoreMatrix.js
+jalview/analysis/scoremodels/ScoreModels.js
+jalview/analysis/scoremodels/SimilarityParams.js
+jalview/analysis/scoremodels/SimilarityScoreModel.js
+jalview/api/AlignCalcManagerI.js
+jalview/api/AlignCalcWorkerI.js
+jalview/api/AlignViewControllerGuiI.js
+jalview/api/AlignViewControllerI.js
+jalview/api/AlignViewportI.js
+jalview/api/AlignmentColsCollectionI.js
+jalview/api/AlignmentRowsCollectionI.js
+jalview/api/AlignmentViewPanel.js
+jalview/api/BuildDetailsI.js
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+jalview/api/StructureSelectionManagerProvider.js
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+jalview/api/analysis/PairwiseScoreModelI.js
+jalview/api/analysis/ScoreModelI.js
+jalview/api/analysis/SimilarityParamsI.js
+jalview/api/structures/JalviewStructureDisplayI.js
+jalview/bin/ArgsParser.js
+jalview/bin/BuildDetails.js
+jalview/bin/Cache.js
+jalview/bin/Jalview.js
+jalview/controller/AlignViewController.js
+jalview/datamodel/ASequence.js
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+jalview/datamodel/AlignmentView.js
+jalview/datamodel/AnnotatedCollectionI.js
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+jalview/datamodel/CigarBase.js
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+jalview/datamodel/ContiguousI.js
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+jalview/datamodel/DBRefSource.js
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+jalview/ext/ensembl/EnsemblSeqProxy.js
+jalview/ext/ensembl/EnsemblSequenceFetcher.js
+jalview/ext/jmol/JalviewJmolBinding.js
+jalview/ext/jmol/JmolCommands.js
+jalview/ext/jmol/JmolParser.js
+jalview/fts/api/FTSData.js
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+jalview/fts/core/FTSRestClient.js
+jalview/fts/core/FTSRestRequest.js
+jalview/fts/core/FTSRestResponse.js
+jalview/fts/core/GFTSPanel.js
+jalview/fts/service/pdb/PDBFTSPanel.js
+jalview/fts/service/pdb/PDBFTSRestClient.js
+jalview/fts/service/uniprot/UniProtFTSRestClient.js
+jalview/fts/service/uniprot/UniprotFTSPanel.js
+jalview/gui/AlignFrame.js
+jalview/gui/AlignViewport.js
+jalview/gui/AlignmentPanel.js
+jalview/gui/AnnotationColumnChooser.js
+jalview/gui/AnnotationLabels.js
+jalview/gui/AnnotationPanel.js
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+jalview/gui/AppJmol.js
+jalview/gui/AppJmolBinding.js
+jalview/gui/CalculationChooser.js
+jalview/gui/ColourMenuHelper.js
+jalview/gui/ComboBoxTooltipRenderer.js
+jalview/gui/Desktop.js
+jalview/gui/FeatureRenderer.js
+jalview/gui/FeatureSettings.js
+jalview/gui/FeatureTypeSettings.js
+jalview/gui/FontChooser.js
+jalview/gui/IProgressIndicator.js
+jalview/gui/IdCanvas.js
+jalview/gui/IdPanel.js
+jalview/gui/IdwidthAdjuster.js
+jalview/gui/JalviewBooleanRadioButtons.js
+jalview/gui/JalviewChangeSupport.js
+jalview/gui/JalviewColourChooser.js
+jalview/gui/JalviewDialog.js
+jalview/gui/JvSwingUtils.js
+jalview/gui/OverviewCanvas.js
+jalview/gui/OverviewPanel.js
+jalview/gui/PaintRefresher.js
+jalview/gui/PopupMenu.js
+jalview/gui/Preferences.js
+jalview/gui/ProgressBar.js
+jalview/gui/ProgressPanel.js
+jalview/gui/ScalePanel.js
+jalview/gui/SeqCanvas.js
+jalview/gui/SeqPanel.js
+jalview/gui/SequenceFetcher.js
+jalview/gui/SequenceRenderer.js
+jalview/gui/SliderPanel.js
+jalview/gui/StructureChooser.js
+jalview/gui/StructureViewer.js
+jalview/gui/StructureViewerBase.js
+jalview/gui/TreeCanvas.js
+jalview/gui/TreePanel.js
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+jalview/io/AlignFile.js
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+jalview/io/AlignmentFileWriterI.js
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+jalview/io/FastaFile.js
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+jalview/io/FileFormatI.js
+jalview/io/FileFormats.js
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+jalview/io/FormatAdapter.js
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+jalview/io/JPredFile.js
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+jalview/io/JalviewFileFilter.js
+jalview/io/JalviewFileView.js
+jalview/io/JnetAnnotationMaker.js
+jalview/io/NewickFile.js
+jalview/io/PDBFeatureSettings.js
+jalview/io/PIRFile.js
+jalview/io/ScoreMatrixFile.js
+jalview/io/SequenceAnnotationReport.js
+jalview/io/StructureFile.js
+jalview/io/TCoffeeScoreFile.js
+jalview/io/cache/JvCacheableInputBox.js
+jalview/javascript/json/JSON.js
+jalview/javascript/log4j/ConsoleAppender.js
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+jalview/javascript/log4j/Level.js
+jalview/javascript/log4j/Logger.js
+jalview/javascript/log4j/Priority.js
+jalview/javascript/log4j/SimpleLayout.js
+jalview/javascript/log4j/spi/OptionHandler.js
+jalview/javascript/web/Client.js
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+jalview/javascript/web/WebResource.js
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+jalview/jbgui/GAlignFrame.js
+jalview/jbgui/GAlignmentPanel.js
+jalview/jbgui/GDesktop.js
+jalview/jbgui/GFontChooser.js
+jalview/jbgui/GPreferences.js
+jalview/jbgui/GSliderPanel.js
+jalview/jbgui/GStructureChooser.js
+jalview/jbgui/GStructureViewer.js
+jalview/jbgui/GTreePanel.js
+jalview/jbgui/IntKeyStringValueEntry.js
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+jalview/renderer/ResidueShader.js
+jalview/renderer/ResidueShaderI.js
+jalview/renderer/ScaleRenderer.js
+jalview/renderer/seqfeatures/FeatureColourFinder.js
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+jalview/schemes/HelixColourScheme.js
+jalview/schemes/HydrophobicColourScheme.js
+jalview/schemes/IdColourScheme.js
+jalview/schemes/JalviewColourScheme.js
+jalview/schemes/NucleotideColourScheme.js
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+jalview/schemes/PurinePyrimidineColourScheme.js
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+jalview/structure/AtomSpec.js
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+jalview/structure/SelectionListener.js
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+jalview/structure/SequenceListener.js
+jalview/structure/StructureImportSettings.js
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+jalview/structure/StructureMapping.js
+jalview/structure/StructureMappingcommandSet.js
+jalview/structure/StructureSelectionManager.js
+jalview/structure/VamsasSource.js
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+jalview/urls/CustomUrlProvider.js
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+jalview/urls/UrlLinkDisplay.js
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+jalview/util/Format.js
+jalview/util/LinkedIdentityHashSet.js
+jalview/util/MapList.js
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+jalview/util/UrlLink.js
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+jalview/workers/ComplementConsensusThread.js
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+jalview/workers/StrucConsensusThread.js
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+jalview/ws/dbsources/EbiFileRetrievedProxy.js
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+jalview/ws/dbsources/EmblSource.js
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+jalview/ws/seqfetcher/DbSourceProxy.js
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+jalview/ws/sifts/SiftsSettings.js
+jalview/xml/binding/jalview/Annotation.js
+jalview/xml/binding/jalview/AnnotationElement.js
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+jalview/xml/binding/jalview/Pdbentry.js
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+jalview/xml/binding/jalview/SequenceType.js
+jalview/xml/binding/jalview/VAMSAS.js
+jalview/xml/binding/jalview/WebServiceParameterSet.js
+jalview/xml/binding/uniprot/CitationType.js
+jalview/xml/binding/uniprot/CommentType.js
+jalview/xml/binding/uniprot/ConsortiumType.js
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+jalview/xml/binding/uniprot/IsoformType.js
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+jalview/xml/binding/uniprot/LocationType.js
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+jalview/xml/binding/uniprot/ReferenceType.js
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+jalview/xml/binding/uniprot/SourceDataType.js
+jalview/xml/binding/uniprot/SourceType.js
+jalview/xml/binding/uniprot/SubcellularLocationType.js
+jalview/xml/binding/uniprot/Uniprot.js
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+java/awt/event/ActionEvent.js
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