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(parent: a2d8ea9) | patch
JAL-4305 Isolate and unify the Jalview object from all the gubbins in jalview.bin...
authorBen Soares <b.soares@dundee.ac.uk>
Thu, 19 Oct 2023 17:33:56 +0000 (18:33 +0100)
committerBen Soares <b.soares@dundee.ac.uk>
Thu, 19 Oct 2023 17:33:56 +0000 (18:33 +0100)
commit25e2a6f59681e1e7d9602a451fbcf3a2b414a49a
tree570409b201c3948e00f37a7c2c021306f619eaadtree | snapshot
parenta2d8ea9632a3d89dac8b391bebcac651f473804ecommit | diff
JAL-4305 Isolate and unify the Jalview object from all the gubbins in jalview.bin.Jalview or jalview.gui.Desktop with a JalviewObject interface. Adjust/fix some example groovy scripts.
29 files changed:
examples/groovy/ComputePeptideVariants.groovy diff | blob | history
examples/groovy/JvLoadTester.groovy diff | blob | history
examples/groovy/PIDmatrix.groovy diff | blob | history
examples/groovy/alignLoadedFile.groovy diff | blob | history
examples/groovy/annotationForSelectedSequence.groovy diff | blob | history
examples/groovy/parseproperties.groovy diff | blob | history
examples/groovy/printtitle.groovy diff | blob | history
examples/groovy/removeFeaturesByGroup.groovy diff | blob | history
examples/groovy/selectColumnsByFeatureAndGroup.groovy diff | blob | history
examples/groovy/sitesForSelectedColumns.groovy diff | blob | history
examples/groovy/stripUniprotPrefixes.groovy diff | blob | history
examples/groovy/visibleFeaturesCounter.groovy diff | blob | history
src/jalview/bin/Jalview.java diff | blob | history
src/jalview/bin/groovy/JalviewObject.java [new file with mode: 0644] blob
src/jalview/bin/groovy/JalviewObjectI.java [new file with mode: 0644] blob
src/jalview/gui/AlignFrame.java diff | blob | history
src/jalview/gui/AlignViewport.java diff | blob | history
src/jalview/gui/Desktop.java diff | blob | history
src/jalview/gui/QuitHandler.java diff | blob | history
src/jalview/gui/WsJobParameters.java diff | blob | history
src/jalview/io/VamsasAppDatastore.java diff | blob | history
src/jalview/project/Jalview2XML.java diff | blob | history
src/jalview/workers/AlignmentAnnotationFactory.java diff | blob | history
test/jalview/bin/CommandsTest.java diff | blob | history
test/jalview/bin/CommandsTest2.java diff | blob | history
test/jalview/gui/DesktopTests.java diff | blob | history
test/jalview/io/CrossRef2xmlTests.java diff | blob | history
test/jalview/project/Jalview2xmlTests.java diff | blob | history
test/jalview/renderer/seqfeatures/FeatureRendererTest.java diff | blob | history