JAL-1705 DbSourceProxy properties converted to methods, tidy/format code
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Fri, 8 Jan 2016 10:03:40 +0000 (10:03 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Fri, 8 Jan 2016 10:03:40 +0000 (10:03 +0000)
commit409fd993c6e32e999b24082aae107a043a590f8f
treedb4b0f9a8a34619a567fcdc5f88bfd988ec601ab
parent91e4b8c7220621cb79da7a25e683ef6b62b610ff
JAL-1705 DbSourceProxy properties converted to methods, tidy/format code
32 files changed:
src/jalview/datamodel/DBRefSource.java
src/jalview/ext/ensembl/EnsemblCdna.java
src/jalview/ext/ensembl/EnsemblCds.java
src/jalview/ext/ensembl/EnsemblGenome.java
src/jalview/ext/ensembl/EnsemblProtein.java
src/jalview/ext/ensembl/EnsemblSeqProxy.java
src/jalview/ext/ensembl/EnsemblTranscript.java
src/jalview/ext/ensembl/SeqFetcher.java
src/jalview/gui/SequenceFetcher.java
src/jalview/util/DBRefUtils.java
src/jalview/ws/DBRefFetcher.java
src/jalview/ws/SequenceFetcher.java
src/jalview/ws/dbsources/EmblCdsSource.java [moved from src/jalview/ws/dbsources/EmblCdsSouce.java with 89% similarity]
src/jalview/ws/dbsources/EmblSource.java
src/jalview/ws/dbsources/EmblXmlSource.java
src/jalview/ws/dbsources/GeneDbSource.java
src/jalview/ws/dbsources/Pdb.java
src/jalview/ws/dbsources/Pfam.java
src/jalview/ws/dbsources/PfamFull.java
src/jalview/ws/dbsources/PfamSeed.java
src/jalview/ws/dbsources/Rfam.java
src/jalview/ws/dbsources/RfamFull.java
src/jalview/ws/dbsources/RfamSeed.java
src/jalview/ws/dbsources/Uniprot.java
src/jalview/ws/dbsources/UniprotName.java [moved from src/jalview/ws/dbsources/UnprotName.java with 88% similarity]
src/jalview/ws/dbsources/Xfam.java
src/jalview/ws/seqfetcher/ASequenceFetcher.java
src/jalview/ws/seqfetcher/DbSourceProxy.java
src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
test/jalview/ext/ensembl/EnsemblSeqProxyTest.java
test/jalview/ext/ensembl/SeqFetcherTest.java [new file with mode: 0644]
test/jalview/ws/SequenceFetcherTest.java [new file with mode: 0644]