JAL-3445 preliminary BSML reader
authorhansonr <hansonr@STO24954W.ad.stolaf.edu>
Sat, 28 Sep 2019 12:55:20 +0000 (08:55 -0400)
committerhansonr <hansonr@STO24954W.ad.stolaf.edu>
Sat, 28 Sep 2019 12:55:20 +0000 (08:55 -0400)
commit5115c19374566cc46eaac00f5ea0dbda5ff39b09
tree88e8d859c1577d9ce8688d6d75299bd94fd832a2
parent732b23aab5c88efbd8ca24db9e432345492ed9b1
JAL-3445 preliminary BSML reader

- only dna type
- only GENE class features
- only primary strand reading, not complement
- test file put into examples/testdata
- uses javax.xml.parsers.DocumentBuilder
- seems to work in Java; needs TestNG test
- not tested in JavaScript
- for discussion only
examples/testdata/10-poxgenomes.bbb [new file with mode: 0644]
src/jalview/io/BSMLFile.java [new file with mode: 0644]
src/jalview/io/FileFormat.java
src/jalview/io/IdentifyFile.java