source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	hansonr <hansonr@STO24954W.ad.stolaf.edu>
	Wed, 8 May 2019 21:42:23 +0000 (16:42 -0500)
committer	hansonr <hansonr@STO24954W.ad.stolaf.edu>
	Wed, 8 May 2019 21:42:23 +0000 (16:42 -0500)
commit	5721b73c6d5de84b21a989a8734e4c161f5dc630
tree	5f6d30a0107aee0dedbbc057b46f1f8e94f43316	tree \| snapshot
parent	87256ba36fb105a1115067ffe2563412e9281d2d	commit \| diff

JAL-3253 preliminary static fixes for JavaScript part 2

Includes lazy dynamic loading of SequenceFetcher database options.

Note that if WebServices menu is enabled (Java, not JavaScript), then
all web-based database proxies are instantiated anyway.

50 files changed:

src/jalview/analysis/AlignmentSorter.java		diff \| blob \| history
src/jalview/bin/Cache.java		diff \| blob \| history
src/jalview/bin/Jalview.java		diff \| blob \| history
src/jalview/commands/ChangeCaseCommand.java		diff \| blob \| history
src/jalview/datamodel/Alignment.java		diff \| blob \| history
src/jalview/datamodel/DBRefSource.java		diff \| blob \| history
src/jalview/datamodel/ResidueCount.java		diff \| blob \| history
src/jalview/datamodel/SecondaryStructureAnnotation.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblInfo.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblMap.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblRestClient.java		diff \| blob \| history
src/jalview/fts/service/pdb/PDBFTSRestClient.java		diff \| blob \| history
src/jalview/fts/service/uniprot/UniProtFTSRestClient.java		diff \| blob \| history
src/jalview/gui/AlignFrame.java		diff \| blob \| history
src/jalview/gui/AnnotationColumnChooser.java		diff \| blob \| history
src/jalview/gui/AnnotationLabels.java		diff \| blob \| history
src/jalview/gui/AppVarnaBinding.java		diff \| blob \| history
src/jalview/gui/ColourMenuHelper.java		diff \| blob \| history
src/jalview/gui/Console.java		diff \| blob \| history
src/jalview/gui/CrossRefAction.java		diff \| blob \| history
src/jalview/gui/Desktop.java		diff \| blob \| history
src/jalview/gui/JalviewAppender.java		diff \| blob \| history
src/jalview/gui/LineartOptions.java		diff \| blob \| history
src/jalview/gui/MenuChooser.java		diff \| blob \| history
src/jalview/gui/Preferences.java		diff \| blob \| history
src/jalview/jbgui/GPreferences.java		diff \| blob \| history
src/jalview/structures/models/AAStructureBindingModel.java		diff \| blob \| history
src/jalview/ws/SequenceFetcher.java		diff \| blob \| history
src/jalview/ws/dbsources/PfamFull.java		diff \| blob \| history
src/jalview/ws/dbsources/PfamSeed.java		diff \| blob \| history
src/jalview/ws/seqfetcher/ASequenceFetcher.java		diff \| blob \| history
src/jalview/ws/seqfetcher/DbSourceProxy.java		diff \| blob \| history
src/jalview/ws/seqfetcher/DbSourceProxyRoot.java	[new file with mode: 0644]	blob
test/jalview/analysis/FinderTest.java		diff \| blob \| history
test/jalview/analysis/GeneticCodesTest.java		diff \| blob \| history
test/jalview/ext/jmol/JmolParserTest.java		diff \| blob \| history
test/jalview/gui/AlignFrameTest.java		diff \| blob \| history
test/jalview/gui/AlignViewportTest.java		diff \| blob \| history
test/jalview/gui/AlignmentPanelTest.java		diff \| blob \| history
test/jalview/gui/AnnotationChooserTest.java		diff \| blob \| history
test/jalview/gui/AnnotationColumnChooserTest.java		diff \| blob \| history
test/jalview/gui/AnnotationRowFilterTest.java		diff \| blob \| history
test/jalview/gui/CalculationChooserTest.java		diff \| blob \| history
test/jalview/gui/FreeUpMemoryTest.java		diff \| blob \| history
test/jalview/gui/SeqPanelTest.java		diff \| blob \| history
test/jalview/io/AnnotatedPDBFileInputTest.java		diff \| blob \| history
test/jalview/io/BackupFilesTest.java		diff \| blob \| history
test/jalview/ws/PDBSequenceFetcherTest.java		diff \| blob \| history
test/jalview/ws/dbsources/RemoteFormatTest.java		diff \| blob \| history
test/mc_view/PDBfileTest.java		diff \| blob \| history

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