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author	jprocter <Jim Procter>
	Wed, 11 Apr 2007 13:57:45 +0000 (13:57 +0000)
committer	jprocter <Jim Procter>
	Wed, 11 Apr 2007 13:57:45 +0000 (13:57 +0000)
commit	85de15725d1b74ba9e0c35a104132206615d8c13
tree	982e9e163c0af621367b3ea5e716116af22a675e	tree \| snapshot
parent	4f1f764c09427cd63c3e355fa729da86735a8194	commit \| diff

fixed base lookup bug in dna pairwise alignment and ensured abiguous and non-standard aa and na codes are preserved in aligned sequences.

src/jalview/analysis/AlignSeq.java		diff \| blob \| history
src/jalview/schemes/ResidueProperties.java		diff \| blob \| history