JAL-2321 ensure default is ‘parseImmediately=true’

diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java
index 7b1e84a..497f0a5 100755 (executable)
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -75,9 +75,9 @@ public abstract class AlignFile extends FileParse
   /**
    * true if parse() has been called
    */
-  private boolean parseCalled;
+  private boolean parseCalled = false;
 
-  private boolean parseImmediately;
+  private boolean parseImmediately = true;
 
   /**
    * @return if doParse() was called at construction time