JAL-3748 preserve sequence IDs from original alignment view when alignment returned...

diff --git a/src/jalview/datamodel/SeqCigar.java b/src/jalview/datamodel/SeqCigar.java
index c2a6a9c..c282d6e 100644 (file)
--- a/src/jalview/datamodel/SeqCigar.java
+++ b/src/jalview/datamodel/SeqCigar.java
@@ -587,6 +587,7 @@ public class SeqCigar extends CigarSimple
                       + (bounds[2] == 0 ? -1 : bounds[2]));
       seqs[i].setDatasetSequence(ref);
       seqs[i].setDescription(ref.getDescription());
+      SeqsetUtils.SeqCharacterUnhash(seqs[i],alseqs[i].seqProps);
     }
     if (segments != null)
     {