From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 8 Dec 2011 17:17:44 +0000 (+0000)
Subject: (JAL-1013) gap character index for each sequence alphabet
X-Git-Tag: Jalview_2_9~463^2~7
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=17609c2e04aa25bfb73da68317c99c72bd4af8c4

(JAL-1013) gap character index for each sequence alphabet
---

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index a78a079..bc15298 100755
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -95,6 +95,15 @@ public class ResidueProperties
     // extend subt. matrices
   }
 
+  /**
+   * maximum (gap) index for matrices involving protein alphabet 
+   */
+  public final static int maxProteinIndex=23;
+  /**
+   * maximum (gap) index for matrices involving nucleotide alphabet 
+   */
+  public final static int maxNucleotideIndex=10;
+  
   static
   {
     nucleotideIndex = new int[255];