From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 15 Jan 2019 11:19:39 +0000 (+0000)
Subject: JAL-1767 patch buggy PCA view association test
X-Git-Tag: Release_2_11_1_0~78^2~2
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=2c8ef0f88ce90532213c36613b83aa283320b72d

JAL-1767 patch buggy PCA view association test
---

diff --git a/test/jalview/project/Jalview2xmlTests.java b/test/jalview/project/Jalview2xmlTests.java
index a0f1f6d..fb2d3e9 100644
--- a/test/jalview/project/Jalview2xmlTests.java
+++ b/test/jalview/project/Jalview2xmlTests.java
@@ -1151,7 +1151,14 @@ public class Jalview2xmlTests extends Jalview2xmlBase
             "PCA and the tabbed alignment view should be the only two windows on the desktop");
     PCAPanel pcaPanel = (PCAPanel) frames[frames[0] == af ? 1 : 0];
 
-    AlignmentViewPanel restoredNewView = af.getAlignPanels().get(1);
+    AlignmentViewPanel restoredNewView = null;
+    for (AlignmentViewPanel alignpanel : Desktop.getAlignmentPanels(null))
+    {
+      if (alignpanel.getAlignViewport() == pcaPanel.getAlignViewport())
+      {
+        restoredNewView = alignpanel;
+      }
+    }
     assertEquals(restoredNewView.getViewName(), PCAVIEWNAME);
     assertTrue(
             restoredNewView.getAlignViewport() == pcaPanel