From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 18 Jan 2018 14:54:49 +0000 (+0000)
Subject: JAL-2679 update query id to actual case of retrieved gene
X-Git-Tag: Release_2_10_3b1~3^2~3
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=3440eae5b69bdca30f480f9e0d4f0df226630ef9

JAL-2679 update query id to actual case of retrieved gene
---

diff --git a/src/jalview/ext/ensembl/EnsemblGene.java b/src/jalview/ext/ensembl/EnsemblGene.java
index c8b59da..0d5fc26 100644
--- a/src/jalview/ext/ensembl/EnsemblGene.java
+++ b/src/jalview/ext/ensembl/EnsemblGene.java
@@ -152,6 +152,8 @@ public class EnsemblGene extends EnsemblSeqProxy
       }
       if (geneAlignment.getHeight() == 1)
       {
+        // ensure id has 'correct' case for the Ensembl identifier
+        geneId = geneAlignment.getSequenceAt(0).getName();
         getTranscripts(geneAlignment, geneId);
       }
       if (al == null)