From: Ben Soares <b.soares@dundee.ac.uk>
Date: Mon, 27 Aug 2018 15:50:20 +0000 (+0100)
Subject: JAL-3061 / JAL-3053
X-Git-Tag: Release_2_10_5~34^2
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=375a7d14a156804a7b2771e7bd813e17f2f8397e

JAL-3061 / JAL-3053

Fixed broken StockholmFileTest tests
curlyWUSSsecondaryStructureForRNASequence
fullWUSSsecondaryStructureForRNASequence
by adding " ." as a recognised Annotation.isWhiteSpace displayCharacter
(which happens for StockholmFile '.' RNA SS annotations)
---

diff --git a/src/jalview/datamodel/Annotation.java b/src/jalview/datamodel/Annotation.java
index ae29417..f6919cd 100755
--- a/src/jalview/datamodel/Annotation.java
+++ b/src/jalview/datamodel/Annotation.java
@@ -210,7 +210,10 @@ public class Annotation
     return ((value == 0f)
             && ((description == null) || (description.trim().length() == 0))
             && ((displayCharacter == null)
-                    || (displayCharacter.trim().length() == 0))
+                    || (displayCharacter.trim().length() == 0)
+                    || (displayCharacter.equals(" ."))) // RNA Stockholm blank
+                                                        // displayCharacter can
+                                                        // end up like this
             && (secondaryStructure == '\0' || (secondaryStructure == ' '))
             && colour == null);
   }