From: tcofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Fri, 26 May 2017 14:27:16 +0000 (+0100)
Subject: JAL-2465 Improvement to re-instate storing recently opened URLs for alignments loaded... 
X-Git-Tag: Release_2_10_2~3^2~57^2~2
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=4e486a5e888bc3844a94f27480e3383a5b4be005

JAL-2465 Improvement to re-instate storing recently opened URLs for alignments loaded from a structure format via URL
---

diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java
index bd8bc53..b7629c4 100755
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -345,12 +345,16 @@ public class FileLoader implements Runnable
               String tempStructureFileStr = createNamedJvTempFile(
                       urlLeafName, structExt);
               UrlDownloadClient.download(file, tempStructureFileStr);
-              file = tempStructureFileStr;
-              protocol = DataSourceType.FILE;
+              al = fa.readFile(tempStructureFileStr, DataSourceType.FILE,
+                      format);
+              source = fa.getAlignFile();
+            }
+            else
+            {
+              al = fa.readFile(file, protocol, format);
+              source = fa.getAlignFile(); // keep reference for later if
+                                          // necessary.
             }
-            al = fa.readFile(file, protocol, format);
-            source = fa.getAlignFile(); // keep reference for later if
-                                        // necessary.
           }
         } catch (java.io.IOException ex)
         {