From: James Procter <j.procter@dundee.ac.uk>
Date: Thu, 28 Sep 2023 17:05:17 +0000 (+0100)
Subject: JAL-1556 JAL-4090 colour by annotation options on annotation label popup menu
X-Git-Tag: Release_2_11_3_0~6^2~18
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=5cce363c980b8f54e5dac71765ed320a0488abbd

JAL-1556 JAL-4090 colour by annotation options on annotation label popup menu
---

diff --git a/help/help/html/colourSchemes/annotationColouring.html b/help/help/html/colourSchemes/annotationColouring.html
index 2272503..c9221a1 100755
--- a/help/help/html/colourSchemes/annotationColouring.html
+++ b/help/help/html/colourSchemes/annotationColouring.html
@@ -30,9 +30,17 @@
   <p>Jalview allows the columns of an alignment to be coloured using
     any numerical annotation rows added to that alignment.</p>
   Select &quot;Colour&quot;
-  <strong>&#8594;</strong> &quot;.. by Annotation&quot; to bring up the
+  <strong>&#8594;</strong> &quot;by Annotation...&quot; to bring up the
   Colour by Annotation settings window.
   <br>
+	<br>You can also apply Colour by annotation for a particular annotation
+	(or per-sequence set) by right-clicking an annotation row's label and selecting &quot;Colour by Annotation...&quot; or &quot;Colour by Annotation (per Sequence)...&quot; from the 
+	<strong>Annotation label popup menu</strong>. (<em>Since Jalview 2.11.3</em>)
+	<br>
+  <div align="center">
+  <img src="../features/annotationsubmenucolbyannot.png" width="414" height="266">
+  </div>
+  <p><strong>The Colour by Annotation Settings Window</strong></p>
   <br>
   <div align="center">
     <img src="annotationColourSetting.gif" width="471" height="256">
diff --git a/help/help/html/features/annotationsubmenucolbyannot.png b/help/help/html/features/annotationsubmenucolbyannot.png
new file mode 100644
index 0000000..22f69d9
Binary files /dev/null and b/help/help/html/features/annotationsubmenucolbyannot.png differ