From: Jim Procter <j.procter@dundee.ac.uk>
Date: Wed, 30 Mar 2022 14:49:09 +0000 (+0100)
Subject: Merge branch 'bug/JAL-3973_source_tarball_not_building' into develop
X-Git-Tag: Release_2_11_2_1~13
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=9fe82acb01cd20f4efe019dc61f1b5a2dcce594b;hp=9eb16cda6af9b86207401de2feb8baf409e14687

Merge branch 'bug/JAL-3973_source_tarball_not_building' into develop
---

diff --git a/RELEASE b/RELEASE
index ddc7974..dbf7cac 100644
--- a/RELEASE
+++ b/RELEASE
@@ -1,2 +1,2 @@
 jalview.release=releases/Release_2_11_2_Branch
-jalview.version=2.11.2.0
+jalview.version=2.11.2.1
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index b9a27ff..d9df337 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -58,6 +58,57 @@ li:before {
     </tr>
     <tr>
       <td width="60" align="center" nowrap><strong><a
+          id="Jalview.2.11.2">2.11.2</a><a id="Jalview.2.11.2.0">.1</a><br />
+          <em>31/03/2022</em></strong></td>
+      <td align="left" valign="top">
+        <ul>
+          <li></li>
+        </ul>
+      </td>
+      <td align="left" valign="top">
+        <ul>
+          <li>
+            <!-- JAL-3975 -->Residue selection using keyboard input
+            stops working after first "Create sequence feature"
+          </li>
+          <li>
+            <!-- JAL-3976 -->3D Structure chooser fails to select
+            structures from 3D-beacons and pops up a 'null' dialog
+          </li>
+          <li>
+            <!-- JAL-3886 -->Pfam and Rfam alignment retrieval as
+            gzipped stockholm doesn't work on JalviewJS build of 2.11.2
+          </li>
+          <li>
+            <!-- JAL-3973 -->Cannot build Jalview 2.11.2.0 via gradle
+            from its source tarball
+          </li>
+        </ul> <em>New Known Issues</em>
+      <ul>
+          <li>
+            <!-- JAL-3873 -->Colour by->all views doesn't allow
+            colouring same structure from different views (since
+            2.11.2.0)
+          </li><li>
+          <!-- JAL-3980 -->
+          Sequence ID tooltip not showing during long running
+          retrieval/crossref operations (affects at least 2.11.1
+          onwards)
+          </li>
+          <li>
+            <!-- JAL-3972 -->Java 11 Only: Jalview 2.11.2.0 OSX install
+            not working due to VAqua requiring
+            sun.awt.image.MultiResolutionImage
+          </li>
+          <li>
+            <!-- JAL-3981 -->Sequence Details can take a long time to be
+            displayed for heavily annotated sequences (all versions)
+          </li>
+        </ul>
+      </td>
+    </tr>
+    <tr>
+      <td width="60" align="center" nowrap><strong><a
           id="Jalview.2.11.2">2.11.2</a><a id="Jalview.2.11.2.0">.0</a><br />
           <em>10/03/2022</em></strong></td>
       <td align="left" valign="top">
@@ -162,8 +213,8 @@ li:before {
               application from command line. <!-- JAL-3523 -->
           </em>
           </li>
-          <li>Notarized MacOS installer for compliance with
-            latest OSX releases (Monterey)</li>
+          <li>Notarized MacOS installer for compliance with latest
+            OSX releases (Monterey)</li>
           <li>
             <!-- JAL-3805 -->Uninstaller application for old
             (InstallAnywhere based) Jalview installations removed from
@@ -228,7 +279,9 @@ li:before {
           <li>
             <!--   -->First integrated JalviewJS and Jalview release
           </li>
-          <li><!-- JAL-3841,JAL-3248 -->Updated README and doc/building.md</li>
+          <li>
+            <!-- JAL-3841,JAL-3248 -->Updated README and doc/building.md
+          </li>
           <li>
             <!-- JAL-3789, JAL-3679 -->Improved JalviewJS/Jalview build
             process, added support for system package provided eclipse
@@ -246,7 +299,7 @@ li:before {
           </li>
         </ul>
       </td>
-      <td>
+      <td align="left" valign="top">
         <ul>
           <li>
             <!-- JAL-3674 -->Slow structure commands can block Jalview