From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 13 Feb 2018 15:31:35 +0000 (+0000)
Subject: JAL-2781 ensure Trim is disabled before test starts
X-Git-Tag: Release_2_10_4~68^2~5
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=b3d51eeb3bce1bcc3dc639c8c6774845181413ad

JAL-2781 ensure Trim is disabled before test starts
---

diff --git a/test/jalview/structure/StructureSelectionManagerTest.java b/test/jalview/structure/StructureSelectionManagerTest.java
index a882bce..286be1b 100644
--- a/test/jalview/structure/StructureSelectionManagerTest.java
+++ b/test/jalview/structure/StructureSelectionManagerTest.java
@@ -27,6 +27,7 @@ import static org.testng.AssertJUnit.assertTrue;
 
 import jalview.analysis.AlignmentUtils;
 import jalview.api.structures.JalviewStructureDisplayI;
+import jalview.bin.Cache;
 import jalview.datamodel.AlignedCodonFrame;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
@@ -46,6 +47,7 @@ import jalview.io.FileLoader;
 import jalview.io.Jalview2xmlBase;
 import jalview.io.StructureFile;
 import jalview.util.MapList;
+import jalview.ws.DBRefFetcher;
 import jalview.ws.sifts.SiftsSettings;
 
 import java.util.ArrayList;
@@ -349,6 +351,9 @@ public class StructureSelectionManagerTest extends Jalview2xmlBase
   public void testAssociatedMappingToSubSeq() throws Exception
   {
 
+    // currently this test fails if trimming is enabled
+    Cache.setProperty(DBRefFetcher.TRIM_RETRIEVED_SEQUENCES,
+            Boolean.FALSE.toString());
     String TEMP_FACTOR_AA="Temperature Factor";
     String PDBID = "4IM2";
     String FullLengthSeq = ">TBK1_HUMAN Serine/threonine-protein kinase TBK1\n" +