From: James Procter <j.procter@dundee.ac.uk>
Date: Thu, 30 Nov 2023 15:17:41 +0000 (+0000)
Subject: Patch fixes JAL-4165 - added to release notes JAL-4351
X-Git-Tag: Release_2_11_3_2^2~2
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=ba1f9fee25b87bdac0c535019252b787939a8f80

Patch fixes JAL-4165 - added to release notes JAL-4351
---

diff --git a/help/markdown/releases/release-2_11_3_2.md b/help/markdown/releases/release-2_11_3_2.md
index 799d521..906cc93 100644
--- a/help/markdown/releases/release-2_11_3_2.md
+++ b/help/markdown/releases/release-2_11_3_2.md
@@ -9,5 +9,7 @@ channel: "release"
 ## Issues Resolved
 
 - <!-- JAL-4344 --> --structureimage exports an image without the fully rendered structure when run via CLI (known defect since 2.11.3.0)
+- <!-- JAL-4165 --> Missing last letter when copying consensus sequence from alignment after applying filter (known defect affecting 2.10.4 onwards)
+
 
 
diff --git a/src/jalview/gui/AnnotationLabels.java b/src/jalview/gui/AnnotationLabels.java
index 6b98944..94f8790 100755
--- a/src/jalview/gui/AnnotationLabels.java
+++ b/src/jalview/gui/AnnotationLabels.java
@@ -1112,7 +1112,7 @@ public class AnnotationLabels extends JPanel
     if (av.hasHiddenColumns())
     {
       Iterator<int[]> it = av.getAlignment().getHiddenColumns()
-              .getVisContigsIterator(0, sq.getLength(), false);
+              .getVisContigsIterator(0, sq.getLength() + 1, false);
       omitHidden = new String[] { sq.getSequenceStringFromIterator(it) };
     }