From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 16 Nov 2016 16:06:38 +0000 (+0000)
Subject: JAL-2325 release notes for 2.10.1 - pass one
X-Git-Tag: Release_2_10_1~11^2^2~5^2
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=cedabd0437bc17404ee3a8e6a2cb598c34704458

JAL-2325 release notes for 2.10.1 - pass one
---

diff --git a/help/html/releases.html b/help/html/releases.html
index 3fe08cb..40de3d4 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -47,6 +47,70 @@
     <tr>
       <td width="60" nowrap>
         <div align="center">
+          <strong><a name="Jalview.2.10.1">2.10.1</a><br />
+            <em>22/11/2016</em></strong>
+        </div>
+      </td>
+      <td><div align="left">
+	    <em>General</em>
+            <ul>
+	      <li><!-- JAL-98 -->Improved memory usage: sparse arrays used for all consensus calculations</li>
+	      <li><!-- JAL- --></li>
+          </ul>
+          <em>Application</em>
+          <ul>
+   	    <li><!-- JAL-2282-->New replacement token for creating URLs <em>just</em> from database cross references. Users with custom links will receive a warning dialog asking them to update their preferences.</li>
+	    <li><!-- JAL-2287-->Cancel button and escape listener on dialog warning user about disconnecting Jalview from a Chimera session</li>
+	    <li><!-- JAL-2281-->Custom URL links for database cross-references are matched to database name regardless of case</li>
+	    <li></li>
+	    
+
+          </ul>
+          <em>Applet</em>
+          <ul>
+          </ul>
+          <em>Build and deployment</em>
+          <ul>
+            <li></li>
+          </ul>
+	  </div>
+      </td>
+      <td>
+        <div align="left">
+          <em>General</em>
+          <ul>
+	    <li><!-- JAL-2286 -->Columns with more than one modal residue are not coloured or thresholded according to percent identity (first observed in Jalview 2.8.2)</li>
+	    <li><!-- JAL-2301 -->Threonine incorrectly reported as not hydrophobic</li>
+	    <li><!-- JAL-2318 -->Updates to documentation pages (above PID threshold, amino acid properties)</li>
+	    <li><!-- JAL-2292 -->Lower case residues in sequences are not reported as mapped to residues in a structure file in the View Mapping report</li>
+          </ul>
+          <em>Application</em>
+          <ul>
+	    <li><!-- JAL-2282-->Custom URL links for specific database names without regular expressions also offer invalid links from Sequence ID</li>
+	    <li><!-- JAL-2315-->Removing a single configured link in the URL links pane in Connections preferences doesn't actually update Jalview configuration</li>
+	    <li><!-- JAL-2272-->CTRL-Click on a selected region to open the alignment area popup menu doesn't work on El-Capitan</li>
+	    <li><!-- JAL-2280 -->Jalview doesn't offer to associate mmCIF files with similarly named sequences if dropped onto the alignment</li>
+	    <li><!-- JAL-2312 -->Additional mappings are shown for PDB entries where more chains exist in the PDB accession than are reported in the SIFTS file</li>
+	    <li><!-- --></li>
+	    <li><!-- --></li>
+	    <li><!-- --></li>
+          </ul>
+          <em>Applet</em>
+          <ul>
+          </ul>
+          <em>Build and deployment</em>
+          <ul>
+            <li><!-- JAL-2308, -->Failing/passing unit tests</li>
+          </ul>
+          <em>New Known Issues</em>
+          <ul>
+            <li></li>
+          </ul>
+        </div>
+      </td>
+    </tr>
+      <td width="60" nowrap>
+        <div align="center">
           <strong><a name="Jalview.2.10.0b1">2.10.0b1</a><br />
             <em>25/10/2016</em></strong>
         </div>