From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 9 Sep 2015 19:53:56 +0000 (+0100)
Subject: JAL-1645 documentation tweaks
X-Git-Tag: Release_2_10_0~449
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=d9e40ff0b645ce30767cdfaccd28ef269813ba27

JAL-1645 documentation tweaks
---

diff --git a/help/html/features/bioJsonFormat.html b/help/html/features/bioJsonFormat.html
index 09e4197..7828f50 100644
--- a/help/html/features/bioJsonFormat.html
+++ b/help/html/features/bioJsonFormat.html
@@ -31,7 +31,7 @@
     data.</p>
   <p>Jalview 2.9 includes support for reading and writing BioJSON
     v1.0 data directly, or embedded in HTML documents. It can also
-    generate HTML pages which employ the BioJS MSA viewer for
+    generate HTML pages which employ the <a href="biojsmsa.html">BioJS MSA viewer</a> for
     interactive display of BioJSON data.</p>
   <p>
     <strong>Finding out more about BioJSON</strong>
@@ -43,7 +43,7 @@
   <p>
     <strong>Jalview's Support for BioJSON v1.0</strong>
   </p>
-  <p>It is currently possible to export an alignment view along with
+  <p>BioJSON exports of an alignment view include
     the following additional data:</p>
   <ul>
     <li>Alignment Annotations</li>
@@ -54,10 +54,7 @@
     <li>Hidden Sequences</li>
     <li>Sequence Groups</li>
   </ul>
-  <p>
-    <strong>Jalview data not supported in BioJSON v1.0</strong>
-  </p>
-  <p>The following data are not currently preserved on export:</p>
+  <p>The following data are NOT currently preserved on export:</p>
   <ul>
     <li>Alignment Reference sequences</li>
     <li>Representative sequence groups</li>