From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 9 Aug 2005 16:55:20 +0000 (+0000)
Subject: New classes
X-Git-Tag: Release_2_03~56
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=f9ab34c800dfad7165db5b9709853f364ef7cf6b

New classes
---

diff --git a/JalviewApplet.jpx b/JalviewApplet.jpx
index 19e5526..0044ab6 100755
--- a/JalviewApplet.jpx
+++ b/JalviewApplet.jpx
@@ -54,15 +54,12 @@
   <node name="jalview.jbappletgui" type="Package"/>
   <node name="jalview.math" type="Package"/>
   <node name="jalview.schemes" type="Package"/>
-  <node name="jalview.util" type="Package"/>
   <file path="src/jalview/analysis/AAFrequency.java"/>
   <file path="src/jalview/io/AlignFile.java"/>
   <file path="src/jalview/analysis/AlignmentSorter.java"/>
-  <file path="src/jalview/analysis/AlignmentUtil.java"/>
   <file path="src/jalview/analysis/AlignSeq.java"/>
   <file path="src/jalview/io/BLCFile.java"/>
   <file path="src/jalview/io/ClustalFile.java"/>
-  <file path="src/jalview/analysis/CompareAlignments.java"/>
   <file path="src/jalview/analysis/Conservation.java"/>
   <file path="src/jalview/io/FastaFile.java"/>
   <file path="src/jalview/io/FileParse.java"/>
diff --git a/JalviewX.jpx b/JalviewX.jpx
index 181698e..239991a 100755
--- a/JalviewX.jpx
+++ b/JalviewX.jpx
@@ -30,15 +30,18 @@
   <property category="sys" name="ExcludeClassEnabled" value="0"/>
   <property category="sys" name="IncludeTestPath" value="1"/>
   <property category="sys" name="JDK" value="java version 1.4.2_04-b05"/>
-  <property category="sys" name="JvmVersion" value="1.2"/>
+  <property category="sys" name="JvmVersion" value="1.4"/>
   <property category="sys" name="Libraries" value="all"/>
   <property category="sys" name="OutPath" value="classes"/>
   <property category="sys" name="SourcePath" value="src;test"/>
+  <property category="sys" name="SourceVersion" value="1.4"/>
   <property category="sys" name="TestPath" value="test"/>
   <property category="sys" name="Title" value=""/>
   <property category="sys" name="TitleLabel" value="Title:"/>
   <property category="sys" name="Version" value="1.0"/>
   <property category="sys" name="VersionLabel" value="@version"/>
   <property category="sys" name="WorkingDirectory" value="."/>
+  <property category="sys" name="uidesign.size.jalview.jbgui.GPreferences" value="453,333"/>
+  <property category="sys" name="uidesign.size.jalview.jbgui.GSequenceLink" value="400,112"/>
   <file path="build.xml"/>
 </project>