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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / resources /
2023-10-23 James ProcterMerge branch 'feature/JAL-4307_hetatm_showhide' into... tree | commitdiff
2023-10-20 Ben SoaresJAL-4298 Update help docs to reflect Groovy changes improvement/JAL-3783_upgrade_to_groovy-4 tree | commitdiff
2023-10-19 James ProcterJAL-4307 View->Ligands submenu, implementation for... tree | commitdiff
2023-09-12 Ben SoaresJAL-4285 Better checkFiles processing. Better dialog. tree | commitdiff
2023-09-12 Ben SoaresJAL-4285 JAL-4262 Added a scrollable dialog to display... tree | commitdiff
2023-09-08 Ben SoaresJAL-4262 Dialog for GUI and WARN for CLI of old style... tree | commitdiff
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-4206_improve_JalviewFileC... tree | commitdiff
2023-08-09 Ben SoaresJAL-629 Enable output to STDOUT when specifying output... tree | commitdiff
2023-06-26 Ben SoaresMerge branch 'develop' into improvement/JAL-4206_improv... improvement/JAL-4206_improve_JalviewFileChooser_for_flatlaf tree | commitdiff
2023-06-21 Ben SoaresJAL-4001 Change wording from google to plausible or... tree | commitdiff
2023-06-14 Ben SoaresJAL-4206 Added recentlyOpenedCellRenderer to better... tree | commitdiff
2023-06-02 Ben SoaresJAL-4001 Spanish translation tree | commitdiff
2023-06-02 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... tree | commitdiff
2023-06-01 Ben SoaresJAL-4001 Changed title+message to MessageManager tree | commitdiff
2023-05-26 James ProcterJAL-4134 internationalise popup menu entries and show... tree | commitdiff
2023-05-26 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... tree | commitdiff
2023-05-24 Ben SoaresJAL-4186 fix dialog. broken in JalviewJS tree | commitdiff
2023-05-19 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... tree | commitdiff
2023-05-01 Ben SoaresJAL-629 fix lang label names after adjusting colour... tree | commitdiff
2023-05-01 James ProcterJAL-4177 disable ‘Cancel’ as well - since we as yet... features/JAL-4134_treeviewerforcolumns tree | commitdiff
2023-05-01 James ProcterJAL-4123 JAL-3914 JAL-3858 tweak wording and layout... tree | commitdiff
2023-03-02 Ben SoaresJAL-629 Removal of unnecessary methods. Set pLTTD tempf... tree | commitdiff
2023-02-26 Ben SoaresJAL-629 PAE matrix file guesstimate from filename tree | commitdiff
2023-02-24 Ben SoaresJAL-629 add widgets to StructureChooser for tempfac... tree | commitdiff
2023-02-22 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-02-16 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... tree | commitdiff
2023-02-13 Ben SoaresJAL-4125 Spanish translations tree | commitdiff
2023-02-13 Ben SoaresMerge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL... tree | commitdiff
2023-02-13 Ben SoaresJAL-4125 Move confirmation of closing external viewer... tree | commitdiff
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-01-30 Ben SoaresJAL-1988 Make sensible choices if only the opening... merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064 tree | commitdiff
2023-01-25 James ProcterMerge branch 'new_feature/JAL-4019_ambiguous_base_colou... tree | commitdiff
2022-12-05 Ben SoaresJAL-629 implementation of --tempfac options tree | commitdiff
2022-11-10 Ben SoaresJAL-4019 Nucleotide Ambiguity Colour Scheme added.... tree | commitdiff
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... tree | commitdiff
2022-11-09 Ben SoaresJAL-3416 Remove all JFrame/JInternalFrame icons (set... tree | commitdiff
2022-11-04 Ben SoaresJAL-1998 JAL-3772 JAL-3416 Merge conflict resolution... tree | commitdiff
2022-11-03 Ben SoaresJAL-3416 File Chooser iconified, JvOptionPanes iconifie... tree | commitdiff
2022-11-03 Ben SoaresJAL-3416 More JInternalFrame icons tree | commitdiff
2022-11-03 Ben SoaresJAL-3416 Start to add JInternalFrame icons (to replace... tree | commitdiff
2022-10-28 Ben SoaresJAL-1988 JAL-3772 Removed 'Wait' button from waitDialog... tree | commitdiff
2022-10-27 Ben SoaresJAL-1988 Allow generic Container object in JvOptionPane... tree | commitdiff
2022-10-24 Ben SoaresJAL-1988 JAL-3772 Non-blocking modal dialogs for unsave... tree | commitdiff
2022-09-26 Ben SoaresJAL-1988 better wording for quit dialog tree | commitdiff
2022-09-23 Ben SoaresJAL-1988 JAL-3772 Quit confirmation dialog boxes with... tree | commitdiff
2022-09-16 Jim ProcterJAL-4062 copy highlighted region docs, new Alignment... tree | commitdiff
2022-09-15 Jim ProcterJAL-4061 JAL-4062 documentation and button labels.... tree | commitdiff
2022-09-02 Ben SoaresJAL-1988 Added a saves in progress check for quit tree | commitdiff
2022-08-23 Ben SoaresJAL-4014 JAL-4063 Added gecos colourScheme names (INFO... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin... tree | commitdiff
2022-07-26 Ben SoaresJAL-4036 Fixed the virus_host_id query field tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 Add getDbName to the GFTSPanelI and add an... tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 removed often duplicated pluralisation in... tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 New configuration, target and pagination proce... tree | commitdiff
2022-07-04 Jim ProcterJAL-4034 fix #3 change uniprot ref fetch dialog to... tree | commitdiff
2022-07-04 Jim ProcterJAL-4034 fix 1 - reword button tree | commitdiff
2022-04-06 Ben SoaresJAL-3991 JAVA_COMPILE_VERSION put into build_properties... tree | commitdiff
2022-03-08 Jim ProcterMerge branch 'bug/JAL-3103_browser_launcher_problems_ma... tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse... tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti... tree | commitdiff
2022-03-07 Jim ProcterJAL-3685 - two single quotes when replacements are... tree | commitdiff
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2 tree | commitdiff
2022-03-02 Jim ProcterJAL-3619 fix up warning message and minimal patch to... tree | commitdiff
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal... tree | commitdiff
2021-12-08 Jim ProcterJAL-3616 update messages/tooltips/menu items to use... tree | commitdiff
2021-11-05 Jim ProcterJAL-3919 use model format field to ensure we get the... tree | commitdiff
2021-10-01 Jim ProcterJAL-3616 show name of structure viewer in ‘new view... tree | commitdiff
2021-10-01 Jim ProcterJAL-3829 3d beacons logo - misi varadi gave permission... tree | commitdiff
2021-10-01 Jim ProcterJAL-3829 fetch 3D beacons now started by clicking butto... tree | commitdiff
2021-09-29 Jim ProcterJAL-3829 report when 3d-beacons doesn’t provide any... tree | commitdiff
2021-09-21 Jim ProcterJAL-3829 alternative UX: need to select 3d-beacons... tree | commitdiff
2021-09-20 Jim ProcterJAL-3829 do better at detecting structure type, prompt... tree | commitdiff
2021-09-16 Ben SoaresJAL-3774 combined changes from bug/JAL-3774_splitFrameF... tree | commitdiff
2021-09-16 Ben SoaresJAL-3739 (combined) commits from feature/JAL-3739_useFo... tree | commitdiff
2021-09-15 Ben SoaresMerge branch 'develop' into merge/develop_ben2 tree | commitdiff
2021-09-10 Jim ProcterJAL-3829 update for v1.0 3d-beacons api spec tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 proof in principle 3d-beacons sequence fetcher... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 fixed up the 3d-beacons data columns definitio... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 tidying up PDBFTSRestClient test responses... tree | commitdiff
2021-08-30 arngucciJAL-3832 Gui working, with 3DBeacons parameters tree | commitdiff
2021-04-06 arngucciJAL-3829 more testing wit tdbeacons data columns and... arnaud/develop tree | commitdiff
2021-04-01 ArnaldoJAL-3829 attempt to fix my changes to follow the Jira... tree | commitdiff
2021-03-25 ArnaldoCreated 3Dbeacons data_columns.txt Test passed for... tree | commitdiff
2021-03-19 Ben SoaresJAL-3503 Added a Startup tab in Preferences, with gui... tree | commitdiff
2021-02-17 Jim ProcterMerge branch 'feature/JAL-3692enaEndpoint' into patch... tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 Images for splash screen tree | commitdiff
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... tree | commitdiff
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews... tree | commitdiff
2020-12-05 Ben SoaresJAL-3594 Default values for channel properties defined... tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get... tree | commitdiff
2020-12-03 Ben SoaresJAL-3594 New way for build.gradle to override propertie... tree | commitdiff
2020-12-01 Ben SoaresJAL-3594 Different icon/getdown styling when launching... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Added Preferences for Proxy Authentication... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 label.proxy_server -> label.proxy_servers tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add... tree | commitdiff
2020-11-12 Ben SoaresJAL-3676 More explicit tooltip about resetting log... tree | commitdiff
2020-11-10 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error... tree | commitdiff
2020-11-10 Ben SoaresJAL-3676 Added Log Level ComboBox and Copy to Clipboard... tree | commitdiff
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