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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / gui / StructureChooser.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-10-23 James ProcterJAL-4310 let the user know when model pages are not... commit | commitdiff
2023-09-06 James ProcterJAL-629 reinstate INFO level stack trace from Structure... commit | commitdiff
2023-09-01 Ben SoaresMerge branch 'feature/JAL-629_--output_-_means_output_t... commit | commitdiff
2023-09-01 Ben SoaresJAL-629 Fix --structureimage and options commit | commitdiff
2023-08-18 Ben SoaresMerge branch 'feature/JAL-244_Automatically_adjust_left... commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-08-01 Ben SoaresJAL-244 More control of automatic idWidth adjustments... commit | commitdiff
2023-05-26 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... commit | commitdiff
2023-05-26 Ben SoaresJAL-629 dispose of non-displaying StructureChooser... commit | commitdiff
2023-05-25 Ben SoaresJAL-4186 Turn JvOptionPane Callable<Void> handlers... commit | commitdiff
2023-05-23 Ben SoaresJAL-629 Added --structureimage code and formatting... commit | commitdiff
2023-05-22 Ben SoaresJAL-629 --structureimage with formatting args. commit | commitdiff
2023-05-19 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... commit | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply commit | commitdiff
2023-05-01 James ProcterJAL-4177 disable ‘Cancel’ as well - since we as yet... features/JAL-4134_treeviewerforcolumns commit | commitdiff
2023-05-01 James ProcterJAL-4177 disable add/new view when an import is started. commit | commitdiff
2023-05-01 James ProcterJAL-3858 report errors when trying to parse JSON to... commit | commitdiff
2023-04-22 Ben SoaresJAL-629 Test and fix --annotation --ssannotation args... commit | commitdiff
2023-04-19 Ben SoaresJAL-629 Now showing temp fac and secondary structure... commit | commitdiff
2023-04-14 Ben SoaresJAL-629 Adding PAE and TFType at structure loading... commit | commitdiff
2023-03-06 Ben SoaresJAL-629 Fix null AlignPanel. More descriptive label... commit | commitdiff
2023-03-03 Ben SoaresJAL-629 Improved consistency of ArgParser classes ... commit | commitdiff
2023-03-02 Ben SoaresJAL-629 Removal of unnecessary methods. Set pLTTD tempf... commit | commitdiff
2023-03-02 Ben SoaresJAL-629 Some refactoring to allow more flexible use... commit | commitdiff
2023-02-27 Ben SoaresJAL-629 add AF examples for FER1_SPIOL. Link and displa... commit | commitdiff
2023-02-27 Ben SoaresJAL-629 Guesstimate whether to set pLDDT with PDB file commit | commitdiff
2023-02-27 Ben SoaresJAL-629 removed debug prints. added .cif. added some... commit | commitdiff
2023-02-26 Ben SoaresJAL-629 PAE matrix file guesstimate from filename commit | commitdiff
2023-02-24 Ben SoaresJAL-629 Position GUI widgets for PDF file options.... commit | commitdiff
2023-02-22 James ProcterJAL-629 make sure we show GUI when not driven programma... commit | commitdiff
2023-02-22 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... commit | commitdiff
2023-02-16 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... commit | commitdiff
2023-02-03 Ben SoaresJAL-629 Fasta sequence id reading whitespace fix. Flexi... commit | commitdiff
2022-12-15 Ben SoaresJAL-629 move SubId to more logical place. Attempt remov... commit | commitdiff
2022-12-14 Ben SoaresJAL-629 Open Structure Viewer from cmdline commit | commitdiff
2022-10-24 Ben SoaresJAL-1988 JAL-3772 Non-blocking modal dialogs for unsave... commit | commitdiff
2022-08-08 Jim ProcterJAL-4034 show the loading spinner when switching betwee... commit | commitdiff
2022-07-15 Ben SoaresJAL-4034 Use the new non-modal JDialog for 3DBeacons... commit | commitdiff
2022-07-12 Ben SoaresJAL-4034 change to jalview property name commit | commitdiff
2022-07-12 Ben SoaresJAL-4034 showConfirmDialog works for both desktop and... commit | commitdiff
2022-07-11 Ben SoaresJAL-4034 Non-blocking 3D Beacons query after warning... commit | commitdiff
2022-07-11 Ben SoaresJAL-4034 allow a jalview_property to set the threshold... commit | commitdiff
2022-07-04 Jim ProcterJAL-4034 fix #3 change uniprot ref fetch dialog to... commit | commitdiff
2022-07-04 Jim ProcterJAL-4034 Fix #2 show an icon and a button to press... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2021-11-05 Jim ProcterJAL-3875 fully reset filter combo-box when fetch 3d... commit | commitdiff
2021-11-02 Jim ProcterJAL-3875 test case and patch to verify the query 3d... commit | commitdiff
2021-10-01 Jim ProcterJAL-3829 fetch 3D beacons now started by clicking butto... commit | commitdiff
2021-10-01 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3... commit | commitdiff
2021-09-29 Jim ProcterJAL-3829 report when 3d-beacons doesn’t provide any... commit | commitdiff
2021-09-24 Jim ProcterJAL-3829 open web page for 3d beacons structure by... features/r2_11_2/JAL-3829_3dbeacons commit | commitdiff
2021-09-24 Jim ProcterJAL-3829 right click to view popup menu to show link... commit | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... commit | commitdiff
2021-09-21 Jim ProcterJAL-3829 - callback finessing - leave DBRefFetcher... commit | commitdiff
2021-09-21 Jim ProcterJAL-3829 alternative UX: need to select 3d-beacons... commit | commitdiff
2021-09-20 Jim ProcterJAL-3829 tests need to wait for dialog to be closed... commit | commitdiff
2021-09-20 Jim ProcterJAL-3829 do better at detecting structure type, prompt... commit | commitdiff
2021-09-13 Jim ProcterJAL-3829 select single best TDB structure and select... commit | commitdiff
2021-09-10 Jim ProcterJAL-3829 provide both PDBe queries and 3D-Beacons queri... commit | commitdiff
2021-09-08 Jim ProcterJAL-3829 allow client-side selection of structures... commit | commitdiff
2021-09-03 Jim ProcterJAL-3829 comments on the 3D structure chooser’s initial... commit | commitdiff
2021-09-03 Jim ProcterJAL-3829 JAL-3865 StructureChooserQuerySource implement... commit | commitdiff
2021-09-03 Jim ProcterJAL-3829 refactored FilterOption provider to the Struct... commit | commitdiff
2021-08-30 Jim ProcterJAL-3829 3d-beacons structure chooser logic (not yet... commit | commitdiff
2021-08-30 Jim ProcterJAL-3829 pulled out more of the FTS dependent parts... commit | commitdiff
2021-08-30 Jim ProcterJAL-3829 pushed the PDBFTSClient specific code to new... commit | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge commit | commitdiff
2019-06-04 gmungocJAL-2386 avoid duplicate pdbids in free text query bug/JAL-3286duplicatePdbQuery commit | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... commit | commitdiff
2019-01-11 hansonrJS optimization for too aggressive dynamic operation... commit | commitdiff
2018-06-28 Jim ProcterJAL-3048 TODOs for refactoring JalviewFileChooser pattern commit | commitdiff
2018-04-12 gmungocJAL-2944 tidies for review comments commit | commitdiff
2018-04-09 Jim ProcterJAL-2944 ’new view’ and ‘add to view’ button rather... commit | commitdiff
2018-04-09 Jim ProcterJAL-1847 superpose checkbox in structure chooser commit | commitdiff
2018-04-05 Jim ProcterJAL-2944 open selected structures in existing or a... commit | commitdiff
2018-02-07 Jim ProcterJAL-2902 thread off dialog close op to avoid deadlock... commit | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2781 JAL-2902 refactor ‘OK’ action to... commit | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2781 programmatically select structures... commit | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2871 only look up current table view once commit | commitdiff
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... commit | commitdiff
2018-01-18 gmungocJAL-2810 JAL-2886 i18n commit | commitdiff
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings) commit | commitdiff
2017-11-17 Jim ProcterJAL-2698 Cached PDB Entries -> Cached Structures in... commit | commitdiff
2017-11-15 gmungocJAL-2835 spike updated with latest commit | commitdiff
2017-11-08 Jim ProcterMerge branch 'develop' into bug/JAL-2225mapMultipleChains commit | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest commit | commitdiff
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-09-05 gmungocJAL-2225 fix bug in collating unique pdb files and... commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-01 tcofoegbuJAL-2376 copied out patch from Phyre branch commit | commitdiff
2016-11-28 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane commit | commitdiff
2016-11-21 tcofoegbuJAL-2332 bugfix to enable structure chooser opening... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' commit | commitdiff
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