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[jalview.git] / src / jalview / schemes / Blosum62ColourScheme.java

2018-11-19	Jim Procter	JAL-3127 drop redundant hidden representative sequences...	blob \| commitdiff
2018-10-09	Jim Procter	JAL-3127 pass reference to AlignViewportI when creating...	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-02-23	gmungoc	JAL-2403 JAL-1483 changes to ScoreModelI hierarchy...	blob \| commitdiff \| diff to current
2017-02-20	gmungoc	JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...	blob \| commitdiff \| diff to current
2017-02-18	gmungoc	JAL-2416 better encapsulated 'constants' for BLOSUM62...	blob \| commitdiff \| diff to current
2017-02-17	gmungoc	JAL-2416 scoreMatrices removed from ResidueProperties	blob \| commitdiff \| diff to current
2017-02-13	gmungoc	JAL-1632 JAL-2416 load score matrices from file, as...	blob \| commitdiff \| diff to current
2017-02-09	gmungoc	JAL-2371 skip upper-casing consensus as it already is	blob \| commitdiff \| diff to current
2017-01-04	gmungoc	JAL-2371 CollectionColourScheme wraps ColourSchemeI	blob \| commitdiff \| diff to current
2016-12-22	gmungoc	JAL-2360 structure viewers now using ColourMenuHelper...	blob \| commitdiff \| diff to current
2016-12-21	gmungoc	JAL-2361 Blosum is enabled for peptide	blob \| commitdiff \| diff to current
2016-12-20	gmungoc	JAL-2360 ColourSchemes holds configured schemes, AlignF...	blob \| commitdiff \| diff to current
2016-12-16	gmungoc	JAL-2360 refactoring for JalviewColourScheme enum,	blob \| commitdiff \| diff to current
2016-11-17	gmungoc	JAL-98 ProfilesI container for profiles for columns	blob \| commitdiff \| diff to current
2016-10-26	gmungoc	JAL-2286 modal residue check + commenting	blob \| commitdiff \| diff to current
2016-10-25	gmungoc	JAL-2286 use constant for fixed colours	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-03	gmungoc	JAL-98 use Profile to store consensus, ResidueCount...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-12-03	gmungoc	JAL-1609 wip on Chimera colour by sequence	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-05-01	Jim Procter	JAL-1492 JAL-1397 JAL-643 JAL-969 factory method to...	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-05-22	jprocter	Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2006-12-05	amwaterhouse	Sequence is char []	blob \| commitdiff \| diff to current
2006-11-28	amwaterhouse	CurrentColour must not be accessed by multiple sequence...	blob \| commitdiff \| diff to current
2006-11-28	amwaterhouse	CurrentColour must not be accessed by multiple sequence...	blob \| commitdiff \| diff to current
2006-10-10	amwaterhouse	aaIndex replaces aaHash	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-04-07	amwaterhouse	Must check consensus length if autocalculate off	blob \| commitdiff \| diff to current
2005-08-22	amwaterhouse	Conservation colour scheme is no more	blob \| commitdiff \| diff to current
2005-08-18	amwaterhouse	Character methods don't exist in java 1.1	blob \| commitdiff \| diff to current
2005-08-18	amwaterhouse	Proceed with upperCase residue Release_2_03	blob \| commitdiff \| diff to current
2005-08-15	amwaterhouse	Hashtable now in array, not vector	blob \| commitdiff \| diff to current
2005-06-30	amwaterhouse	Formatting changes	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	Formatted source	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	GPL license added	blob \| commitdiff \| diff to current
2005-05-25	amwaterhouse	all can threshold	blob \| commitdiff \| diff to current
2005-04-29	amwaterhouse	just tidying up unused imports	blob \| commitdiff \| diff to current
2005-04-15	amwaterhouse	consensus held in residueColour	blob \| commitdiff \| diff to current
2005-04-13	jprocter	Fixed so that all alternate residues are used to calcul...	blob \| commitdiff \| diff to current
2004-12-15	amwaterhouse	isGap method implemented in utils	blob \| commitdiff \| diff to current
2004-11-02	amwaterhouse	Jalview Imported Sources start	blob \| commitdiff \| diff to current

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