From ce2b9960f07e7182c7e58fa993b7ea77862f018b Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Wed, 12 Nov 2008 11:27:44 +0000
Subject: [PATCH] minor translation bug

---
 src/jalview/analysis/Dna.java |    7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/src/jalview/analysis/Dna.java b/src/jalview/analysis/Dna.java
index 8bf8962..30bc378 100644
--- a/src/jalview/analysis/Dna.java
+++ b/src/jalview/analysis/Dna.java
@@ -515,11 +515,14 @@ public class Dna
           codons.codons[aspos] = new int[]
           { cdp[0], cdp[1], cdp[2] };
         }
-        aspos++;
         if (aspos >= codons.aaWidth)
         {
-          codons.aaWidth = aspos + 1;
+          // update maximum alignment width 
+          // (we can do this without calling checkCodonFrameWidth because it was already done above)
+          codons.setAaWidth(aspos);
         }
+        // ready for next translated reading frame alignment position (if any)
+        aspos++;
       }
     }
     if (resSize > 0)
-- 
1.7.10.2