From a5ab6cce3a64d41c3f91ba49f5e4d9536a2b0018 Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Tue, 2 May 2017 10:42:13 +0100
Subject: [PATCH] JAL-2499 inlined two 1-line methods

---
 src/jalview/appletgui/TreePanel.java |   18 +++---------------
 src/jalview/gui/TreePanel.java       |   15 ++-------------
 2 files changed, 5 insertions(+), 28 deletions(-)

diff --git a/src/jalview/appletgui/TreePanel.java b/src/jalview/appletgui/TreePanel.java
index 70a3c04..8b1f79c 100644
--- a/src/jalview/appletgui/TreePanel.java
+++ b/src/jalview/appletgui/TreePanel.java
@@ -190,7 +190,9 @@ public class TreePanel extends EmbmenuFrame implements ActionListener,
       }
       else
       {
-        ScoreModelI sm = configureScoreModel(pwtype);
+        ScoreModelI sm1 = ScoreModels.getInstance().getScoreModel(pwtype,
+                treeCanvas.ap);
+        ScoreModelI sm = sm1;
         TreeBuilder njtree = type.equals(TreeBuilder.NEIGHBOUR_JOINING) ? new NJTree(
                 av, sm, SimilarityParams.Jalview)
                 : new AverageDistanceTree(av, sm, SimilarityParams.Jalview);
@@ -362,18 +364,4 @@ public class TreePanel extends EmbmenuFrame implements ActionListener,
     inputData.addActionListener(this);
   }
 
-  /**
-   * Gets an instantiated score model for the given name, configured for the
-   * current view if applicable
-   * 
-   * @param modelName
-   * @return
-   */
-  protected ScoreModelI configureScoreModel(String modelName)
-  {
-    ScoreModelI sm = ScoreModels.getInstance().getScoreModel(modelName,
-            treeCanvas.ap);
-    return sm;
-  }
-
 }
diff --git a/src/jalview/gui/TreePanel.java b/src/jalview/gui/TreePanel.java
index f2f0bf7..9dd805e 100755
--- a/src/jalview/gui/TreePanel.java
+++ b/src/jalview/gui/TreePanel.java
@@ -275,7 +275,8 @@ public class TreePanel extends GTreePanel
       }
       else
       {
-        ScoreModelI sm = configureScoreModel();
+        ScoreModelI sm = ScoreModels.getInstance().getScoreModel(
+                scoreModelName, treeCanvas.ap);
         TreeBuilder njtree = treeType.equals(TreeBuilder.NEIGHBOUR_JOINING) ? new NJTree(
                 av, sm, similarityParams) : new AverageDistanceTree(av, sm,
                 similarityParams);
@@ -850,16 +851,4 @@ public class TreePanel extends GTreePanel
             treecalcnm, smn);
     return ttl;
   }
-
-  /**
-   * Instantiate an instance of the score model, configured for the current view
-   * if applicable
-   * 
-   * @return
-   */
-  protected ScoreModelI configureScoreModel()
-  {
-    return ScoreModels.getInstance().getScoreModel(scoreModelName,
-            treeCanvas.ap);
-  }
 }
-- 
1.7.10.2