From 9e5253dce9d7547e3191d596ed10f73e4af0cc1d Mon Sep 17 00:00:00 2001 From: gmungoc Date: Wed, 5 Oct 2016 11:23:53 +0100 Subject: [PATCH] JAL-1191 added mRNA isA transcript to SequenceOntologyLite (because Ensembl now returning coding features as mRNA not transcript!) --- src/jalview/io/gff/SequenceOntologyLite.java | 1 + 1 file changed, 1 insertion(+) diff --git a/src/jalview/io/gff/SequenceOntologyLite.java b/src/jalview/io/gff/SequenceOntologyLite.java index b3f8161..2c972ad 100644 --- a/src/jalview/io/gff/SequenceOntologyLite.java +++ b/src/jalview/io/gff/SequenceOntologyLite.java @@ -51,6 +51,7 @@ public class SequenceOntologyLite implements SequenceOntologyI { "miRNA", "transcript" }, { "lincRNA", "transcript" }, { "rRNA", "transcript" }, + { "mRNA", "transcript" }, // there are many more sub-types of ncRNA... /* -- 1.7.10.2