From 04011072920c5e2587a8d549869ee47e28ad7d81 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 27 Jul 2006 15:58:05 +0000
Subject: [PATCH] remove unnecessary constructor

---
 src/jalview/io/AlignFile.java    |   18 ------------------
 src/jalview/io/BLCFile.java      |    9 ---------
 src/jalview/io/ClustalFile.java  |    5 -----
 src/jalview/io/FastaFile.java    |   10 ----------
 src/jalview/io/FeaturesFile.java |    9 ---------
 src/jalview/io/JPredFile.java    |    9 ---------
 src/jalview/io/MSFfile.java      |    9 ---------
 src/jalview/io/PIRFile.java      |    5 -----
 src/jalview/io/PfamFile.java     |    5 -----
 src/jalview/io/PileUpfile.java   |   10 +---------
 10 files changed, 1 insertion(+), 88 deletions(-)

diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java
index ceec54b..1dafb91 100755
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -48,24 +48,6 @@ public abstract class AlignFile extends FileParse
     {
     }
 
-    /**
-     * Creates a new AlignFile object.
-     *
-     * @param inStr DOCUMENT ME!
-     */
-    public AlignFile(String inStr)
-    {
-        initData();
-        System.out.println("is this ever called??");
-
-        try
-        {
-            parse();
-        }
-        catch (Exception ex)
-        {
-        }
-    }
 
     /**
      * Constructor which parses the data from a file of some specified type.
diff --git a/src/jalview/io/BLCFile.java b/src/jalview/io/BLCFile.java
index 56d40f9..16cc9c0 100755
--- a/src/jalview/io/BLCFile.java
+++ b/src/jalview/io/BLCFile.java
@@ -42,15 +42,6 @@ public class BLCFile extends AlignFile
     {
     }
 
-    /**
-     * Creates a new BLCFile object.
-     *
-     * @param inStr DOCUMENT ME!
-     */
-    public BLCFile(String inStr)
-    {
-        super(inStr);
-    }
 
     /**
      * Creates a new BLCFile object.
diff --git a/src/jalview/io/ClustalFile.java b/src/jalview/io/ClustalFile.java
index 2ea1d2f..30c1400 100755
--- a/src/jalview/io/ClustalFile.java
+++ b/src/jalview/io/ClustalFile.java
@@ -32,11 +32,6 @@ public class ClustalFile
   {
   }
 
-  public ClustalFile(String inStr)
-  {
-    super(inStr);
-  }
-
   public ClustalFile(String inFile, String type)
       throws IOException
   {
diff --git a/src/jalview/io/FastaFile.java b/src/jalview/io/FastaFile.java
index 6d218f4..bfcfaca 100755
--- a/src/jalview/io/FastaFile.java
+++ b/src/jalview/io/FastaFile.java
@@ -41,16 +41,6 @@ public class FastaFile extends AlignFile
     /**
      * Creates a new FastaFile object.
      *
-     * @param inStr DOCUMENT ME!
-     */
-    public FastaFile(String inStr)
-    {
-        super(inStr);
-    }
-
-    /**
-     * Creates a new FastaFile object.
-     *
      * @param inFile DOCUMENT ME!
      * @param type DOCUMENT ME!
      *
diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java
index b3d434e..d7c3775 100755
--- a/src/jalview/io/FeaturesFile.java
+++ b/src/jalview/io/FeaturesFile.java
@@ -40,15 +40,6 @@ public class FeaturesFile extends AlignFile
     {
     }
 
-    /**
-     * Creates a new FeaturesFile object.
-     *
-     * @param inStr DOCUMENT ME!
-     */
-    public FeaturesFile(String inStr)
-    {
-        super(inStr);
-    }
 
     /**
      * Creates a new FeaturesFile object.
diff --git a/src/jalview/io/JPredFile.java b/src/jalview/io/JPredFile.java
index 0734ccd..4a07c9a 100755
--- a/src/jalview/io/JPredFile.java
+++ b/src/jalview/io/JPredFile.java
@@ -44,15 +44,6 @@ public class JPredFile extends AlignFile
     Hashtable Symscores; // indexes of symbol annotation properties in sequenceI vector
     private int QuerySeqPosition;
 
-    /**
-     * Creates a new JPredFile object.
-     *
-     * @param inStr DOCUMENT ME!
-     */
-    public JPredFile(String inStr)
-    {
-        super(inStr);
-    }
 
     /**
      * Creates a new JPredFile object.
diff --git a/src/jalview/io/MSFfile.java b/src/jalview/io/MSFfile.java
index bae4342..7d9c07c 100755
--- a/src/jalview/io/MSFfile.java
+++ b/src/jalview/io/MSFfile.java
@@ -44,15 +44,6 @@ public class MSFfile extends AlignFile
     {
     }
 
-    /**
-     * Creates a new MSFfile object.
-     *
-     * @param inStr DOCUMENT ME!
-     */
-    public MSFfile(String inStr)
-    {
-        super(inStr);
-    }
 
     /**
      * Creates a new MSFfile object.
diff --git a/src/jalview/io/PIRFile.java b/src/jalview/io/PIRFile.java
index b958456..4c07ac9 100755
--- a/src/jalview/io/PIRFile.java
+++ b/src/jalview/io/PIRFile.java
@@ -34,11 +34,6 @@ public class PIRFile
   {
   }
 
-  public PIRFile(String inStr)
-  {
-    super(inStr);
-  }
-
   public PIRFile(String inFile, String type)
       throws IOException
   {
diff --git a/src/jalview/io/PfamFile.java b/src/jalview/io/PfamFile.java
index 8056f38..1af7573 100755
--- a/src/jalview/io/PfamFile.java
+++ b/src/jalview/io/PfamFile.java
@@ -32,11 +32,6 @@ public class PfamFile
   {
   }
 
-  public PfamFile(String inStr)
-  {
-    super(inStr);
-  }
-
   public PfamFile(String inFile, String type)
       throws IOException
   {
diff --git a/src/jalview/io/PileUpfile.java b/src/jalview/io/PileUpfile.java
index c945fd5..6826f67 100755
--- a/src/jalview/io/PileUpfile.java
+++ b/src/jalview/io/PileUpfile.java
@@ -43,15 +43,7 @@ public class PileUpfile  extends MSFfile
     public PileUpfile()
     {
     }
-    /**
-     * Creates a new MSFfile object.
-     *
-     * @param inStr DOCUMENT ME!
-     */
-    public PileUpfile(String inStr)
-    {
-        super(inStr);
-    }
+
 
     /**
      * Creates a new MSFfile object.
-- 
1.7.10.2