From 043de9819c2d780cdfa55dc0e278308e2c97aee1 Mon Sep 17 00:00:00 2001 From: amwaterhouse Date: Thu, 16 Dec 2004 15:45:38 +0000 Subject: [PATCH] Output new alignment bug fixed --- src/jalview/gui/PairwiseAlignPanel.java | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/jalview/gui/PairwiseAlignPanel.java b/src/jalview/gui/PairwiseAlignPanel.java index c771693..b85cb94 100755 --- a/src/jalview/gui/PairwiseAlignPanel.java +++ b/src/jalview/gui/PairwiseAlignPanel.java @@ -28,7 +28,6 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel { acount++; AlignSeq as = new AlignSeq(av.getSelection().sequenceAt(i),av.getSelection().sequenceAt(j),"pep"); - //tf.status.setText("Aligning " + as.getS1().getName() + " and " + as.getS2().getName() + " (" + acount + "/" + (count*(count-1)/2) + ")"); as.calcScoreMatrix(); as.traceAlignment(); @@ -37,8 +36,9 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel totscore = totscore + scores[i][j]; textarea.append(as.getOutput()); - sequences.add( as.getS1() ); - sequences.add( as.getS2() ); + sequences.add( new Sequence( as.getS1().getName(), as.getAStr1()) ); + sequences.add( new Sequence( as.getS2().getName(), as.getAStr2()) ); + } } -- 1.7.10.2