From 58ecc1bd5b01acd8f8378980f369003da9db2ee9 Mon Sep 17 00:00:00 2001 From: gmungoc Date: Thu, 18 Apr 2019 15:32:37 +0100 Subject: [PATCH] JAL-1793 basic help text for VCF option --- help/html/menus/alwfile.html | 7 +++++++ help/html/releases.html | 2 ++ 2 files changed, 9 insertions(+) diff --git a/help/html/menus/alwfile.html b/help/html/menus/alwfile.html index b8445af..57ffa08 100755 --- a/help/html/menus/alwfile.html +++ b/help/html/menus/alwfile.html @@ -129,6 +129,13 @@ features or alignment annotations. +
  • Load VCF File
    +     Load VCF annotations from a plain text or tab-indexed file. +
    This option is offered for nucleotide alignments, and requires at least one + sequence to have known genomic coordinates. +
    Genomic coordinates are attached to entries retrieved from Ensembl. +
    Support for VCF was added in Jalview 2.11. +
  • Close (Control W)
    Close the alignment window. Make sure you have saved your alignment before you close - either as a Jalview project or by using the Save diff --git a/help/html/releases.html b/help/html/releases.html index b58cb31..a8fce60 100755 --- a/help/html/releases.html +++ b/help/html/releases.html @@ -63,6 +63,8 @@ li:before {
    • + Annotate nucleotide alignments from VCF data files
      • +
    • Optional automatic backups when saving Jalview project or alignment files
    • -- 1.7.10.2