From 5a8552c431758f7cb4fdca50f6d50996d13e23bc Mon Sep 17 00:00:00 2001 From: Ben Soares Date: Wed, 20 Sep 2023 00:42:34 +0100 Subject: [PATCH] JAL-629 JAL-4265 JAL-4269 Updated help Documentation --- help/help/html/features/clarguments-basic.html | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/help/help/html/features/clarguments-basic.html b/help/help/html/features/clarguments-basic.html index 0307494..f3c053d 100644 --- a/help/help/html/features/clarguments-basic.html +++ b/help/help/html/features/clarguments-basic.html @@ -477,7 +477,7 @@

--scale

- We can increase the size of the PNG image by a factor of S by following the --image argument with a --scale S argument and value. The value doesn't have to be an integer and should be given as an integer or floating point formatted number, e.g. + We can increase the size of the PNG image by a factor of S by following the --image or --structureimage argument with a --scale S argument and value. The value doesn't have to be an integer and should be given as an integer or floating point formatted number, e.g.

   jalview --open examples/uniref50.fa --colour gecos-ocean --image mypic.png --scale 5.5 --headless
   
@@ -506,7 +506,7 @@

- You can specify two or all of --scale, --width and --height as limits to the size of the image (think of one or two bounding boxes) and the one which produces the smallest scale of image is used. You can also specify each of these as sub-value modifiers to the --image value: + You can specify two or all of --scale, --width and --height as limits to the size of the image (think of one or two bounding boxes) and the one which produces the smallest scale of image is used. You can also specify each of these as sub-value modifiers to the --image or --structureimage value:

   jalview --headless --open https://www.ebi.ac.uk/interpro/api/entry/pfam/PF03760/?annotation=alignment%3Aseed --noshowannotations --colour gecos-flower --image [scale=0.25,width=320,height=240]thumbnail.png
   
@@ -690,7 +690,7 @@

-

The all output wildcard: --output "*.ext", --image "*.ext"

+

The all output wildcard: --output "*/*.ext", --image "*/*.ext"

Purely as an intuitive syntactic sweetener, you can use the --output wildcard * in two places as part of an output path and filename. -- 1.7.10.2