From 636c4829ba51f11e71e56c1470fb3ad73eeb81c3 Mon Sep 17 00:00:00 2001 From: jprocter Date: Mon, 30 May 2005 16:38:44 +0000 Subject: [PATCH] Changed sortByPID to use the gapped PID function. --- src/jalview/analysis/AlignmentSorter.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/jalview/analysis/AlignmentSorter.java b/src/jalview/analysis/AlignmentSorter.java index 40ad372..8274768 100755 --- a/src/jalview/analysis/AlignmentSorter.java +++ b/src/jalview/analysis/AlignmentSorter.java @@ -57,7 +57,7 @@ public class AlignmentSorter { SequenceI seqs[] = new SequenceI[nSeq]; for (int i = 0; i < nSeq; i++) { - scores[i] = Comparison.compare(align.getSequenceAt(i),s); + scores[i] = Comparison.PID(align.getSequenceAt(i),s); seqs[i] = align.getSequenceAt(i); } -- 1.7.10.2