From 792f60087e6b756c77618dee886d00c52587b641 Mon Sep 17 00:00:00 2001
From: kjvdheide <kjvanderheide@dundee.ac.uk>
Date: Tue, 16 Jan 2018 21:59:03 +0000
Subject: [PATCH] JAL-2750 startRes now directly assigned

---
 src/jalview/datamodel/SequenceGroup.java |   18 ++++++++++--------
 1 file changed, 10 insertions(+), 8 deletions(-)

diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java
index 221b031..deabf46 100755
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -101,11 +101,15 @@ public class SequenceGroup implements AnnotatedCollectionI
    */
   public ResidueShaderI cs;
 
-  // start column (base 0)
+  /**
+   * start column (base 0)
+   */
   private int startRes = 0;
 
-  // end column (base 0)
-  int endRes = 0;
+  /**
+   *  end column (base 0)
+   */
+  private int endRes = 0;
 
   public Color outlineColour = Color.black;
 
@@ -752,14 +756,12 @@ public class SequenceGroup implements AnnotatedCollectionI
   /**
    * Set the first column selected by this group. Runs from 0<=i<N_cols
    * 
-   * @param i
+   * @param newStart
    */
   public void setStartRes(int newStart)
   {
-   newStart= Math.max(0,newStart); // sanity check for negative start column positions
-   int before = startRes;
-   startRes = newStart;
-
+    int before = startRes;
+   startRes= Math.max(0,newStart); // sanity check for negative start column positions
    changeSupport.firePropertyChange(SEQ_GROUP_CHANGED, before, startRes);
     
 
-- 
1.7.10.2