From bf702237a1f0b07104d976ee43270711b9e66a4d Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 17 Aug 2005 16:09:37 +0000
Subject: [PATCH] Has version, Groups are optional, trees added to schema

---
 schemas/jalview.xsd |   29 ++++++++++++++++++++++++++---
 1 file changed, 26 insertions(+), 3 deletions(-)

diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd
index 65c7422..4ab3160 100755
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
@@ -14,6 +14,8 @@
     <xs:sequence>
 
 	    <xs:element name="creationDate" type="xs:dateTime"/>
+	    
+	    <xs:element name="version" type="xs:string"/>
 
         <xs:element name="vamsasModel" type="vamsas:VAMSAS"/>
 
@@ -35,7 +37,7 @@
 
             </xs:element>
 
-            <xs:element name="JGroup" maxOccurs="unbounded">
+            <xs:element name="JGroup" minOccurs="0" maxOccurs="unbounded">
 
                 <xs:complexType>
 
@@ -123,9 +125,10 @@
 
                 </xs:complexType>
 
-            </xs:element>    
+            </xs:element>        
+            
 
-			<xs:element name="UserColours" maxOccurs="unbounded">
+			<xs:element name="UserColours" minOccurs="0" maxOccurs="unbounded">
                 <xs:complexType>  
 					 <xs:sequence minOccurs="1">
 					 	<xs:element name="UserColourScheme" type="jalview:JalviewUserColours"/>
@@ -133,6 +136,26 @@
 					 <xs:attribute name="id" type="xs:string"/>
                  </xs:complexType>
             </xs:element>
+            
+               			<xs:element name="tree" minOccurs="0" maxOccurs="unbounded">
+                <xs:complexType>  
+					 <xs:sequence minOccurs="0" maxOccurs="1">
+					    <xs:element name="title" type="xs:string"/>
+					 	<xs:element name="newick" type="xs:string"/>
+					 </xs:sequence>
+					 <xs:attribute name="width" type="xs:int"/>
+					  <xs:attribute name="height" type="xs:int"/>
+					   <xs:attribute name="xpos" type="xs:int"/>
+					    <xs:attribute name="ypos" type="xs:int"/>
+					  <xs:attribute name="fontSize" type="xs:int"/>
+					  <xs:attribute name="threshold" type="xs:float"/>
+					 <xs:attribute name="showBootstrap" type="xs:boolean"/>
+					 <xs:attribute name="showDistances" type="xs:boolean"/>
+					 <xs:attribute name="markUnlinked" type="xs:boolean"/>
+					 <xs:attribute name="fitToWindow" type="xs:boolean"/>
+					 <xs:attribute name="currentTree" type="xs:boolean"/>
+                 </xs:complexType>
+            </xs:element>     
 
 	</xs:sequence>
 
-- 
1.7.10.2