From ff18d7ae4bedb6c79ab2e62032cf5f9a2bfedf6c Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 18 Apr 2019 12:36:53 +0100
Subject: [PATCH] JAL-2620 updated help page to mention alternative genetic
 code tables

---
 help/html/menus/alwcalculate.html |   12 +++++++-----
 1 file changed, 7 insertions(+), 5 deletions(-)

diff --git a/help/html/menus/alwcalculate.html b/help/html/menus/alwcalculate.html
index c7a1c87..d08f713 100755
--- a/help/html/menus/alwcalculate.html
+++ b/help/html/menus/alwcalculate.html
@@ -73,15 +73,17 @@
         parsed into sequence associated annotation which can then be
         used to sort the alignment via the Sort by&#8594;Score menu.
     </em> <br></li>
-    <li><strong>Translate as cDNA</strong> (not applet)<br> <em>This
+    <li><strong>Translate as cDNA</strong><br> <em>This
         option is visible for nucleotide alignments. Selecting this
         option shows the DNA's calculated protein product in a new <a
         href="../features/splitView.html">split frame</a> window. Note
         that the translation is not frame- or intron-aware; it simply
-        translates all codons in each sequence, using the standard <a
-        href="../misc/geneticCode.html">genetic code</a> (any incomplete
-        final codon is discarded). You can perform this action on the
-        whole alignment, or selected rows, columns, or regions.
+        translates all codons in each sequence. You can use the standard <a
+        href="../misc/geneticCode.html">genetic code</a>, or choose an 
+        alternative code table (any incomplete final codon is discarded). 
+        You can perform this action on the whole alignment, or selected 
+        rows, columns, or regions. Alternative code tables were added in
+        Jalview 2.11.
     </em> <br></li>
     <li><strong>Reverse, Reverse Complement</strong> (not applet)<br>
       <em>These options are visible for nucleotide alignments.
-- 
1.7.10.2